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detectRUNS: Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes

Detection of runs of homozygosity and of heterozygosity in diploid genomes using two methods: sliding windows (Purcell et al (2007) <doi:10.1086/519795>) and consecutive runs (Marras et al (2015) <doi:10.1111/age.12259>).

Version: 0.9.6
Depends: R (≥ 3.0.0)
Imports: plyr, iterators, itertools, ggplot2, reshape2, Rcpp, gridExtra, data.table
LinkingTo: Rcpp
Suggests: testthat, knitr, rmarkdown, prettydoc
Published: 2019-10-24
DOI: 10.32614/CRAN.package.detectRUNS
Author: Filippo Biscarini [aut, cre], Paolo Cozzi [aut], Giustino Gaspa [aut], Gabriele Marras [aut]
Maintainer: Filippo Biscarini <filippo.biscarini at gmail.com>
BugReports: https://github.com/bioinformatics-ptp/detectRUNS/issues
License: GPL-3
URL: https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: detectRUNS results

Documentation:

Reference manual: detectRUNS.pdf
Vignettes: detectRUNS: an R package to detect runs of homozygosity and heterozygosity in diploid genomes

Downloads:

Package source: detectRUNS_0.9.6.tar.gz
Windows binaries: r-devel: detectRUNS_0.9.6.zip, r-release: detectRUNS_0.9.6.zip, r-oldrel: detectRUNS_0.9.6.zip
macOS binaries: r-release (arm64): detectRUNS_0.9.6.tgz, r-oldrel (arm64): detectRUNS_0.9.6.tgz, r-release (x86_64): detectRUNS_0.9.6.tgz, r-oldrel (x86_64): detectRUNS_0.9.6.tgz
Old sources: detectRUNS archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=detectRUNS to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.