The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Detection of runs of homozygosity and of heterozygosity in diploid genomes using two methods: sliding windows (Purcell et al (2007) <doi:10.1086/519795>) and consecutive runs (Marras et al (2015) <doi:10.1111/age.12259>).
| Version: | 0.9.6 |
| Depends: | R (≥ 3.0.0) |
| Imports: | plyr, iterators, itertools, ggplot2, reshape2, Rcpp, gridExtra, data.table |
| LinkingTo: | Rcpp |
| Suggests: | testthat, knitr, rmarkdown, prettydoc |
| Published: | 2019-10-24 |
| DOI: | 10.32614/CRAN.package.detectRUNS |
| Author: | Filippo Biscarini [aut, cre], Paolo Cozzi [aut], Giustino Gaspa [aut], Gabriele Marras [aut] |
| Maintainer: | Filippo Biscarini <filippo.biscarini at gmail.com> |
| BugReports: | https://github.com/bioinformatics-ptp/detectRUNS/issues |
| License: | GPL-3 |
| URL: | https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | detectRUNS results |
| Reference manual: | detectRUNS.pdf |
| Vignettes: |
detectRUNS: an R package to detect runs of homozygosity and heterozygosity in diploid genomes |
| Package source: | detectRUNS_0.9.6.tar.gz |
| Windows binaries: | r-devel: detectRUNS_0.9.6.zip, r-release: detectRUNS_0.9.6.zip, r-oldrel: detectRUNS_0.9.6.zip |
| macOS binaries: | r-release (arm64): detectRUNS_0.9.6.tgz, r-oldrel (arm64): detectRUNS_0.9.6.tgz, r-release (x86_64): detectRUNS_0.9.6.tgz, r-oldrel (x86_64): detectRUNS_0.9.6.tgz |
| Old sources: | detectRUNS archive |
Please use the canonical form https://CRAN.R-project.org/package=detectRUNS to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.