The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

diemr: Diagnostic Index Expectation Maximisation in R

Likelihood-based genome polarisation finds which alleles of genomic markers belong to which side of the barrier. Co-estimates which individuals belong to either side of the barrier and barrier strength. Uses expectation maximisation in likelihood framework. The method is described in Baird et al. (2023) <doi:10.1111/2041-210X.14010>.

Version: 1.4.1
Imports: zoo, vcfR
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown
Published: 2024-09-23
DOI: 10.32614/CRAN.package.diemr
Author: Natalia Martinkova ORCID iD [aut, cre], Stuart Baird ORCID iD [aut]
Maintainer: Natalia Martinkova <martinkova at ivb.cz>
BugReports: https://github.com/StuartJEBaird/diem/issues
License: GPL (≥ 3)
NeedsCompilation: no
Citation: diemr citation info
Materials: NEWS
CRAN checks: diemr results

Documentation:

Reference manual: diemr.pdf
Vignettes: Importing data for genome polarisation (source, R code)
Understanding genome polarisation output files (source, R code)
diemr: Diagnostic index expectation maximisation in R (source, R code)

Downloads:

Package source: diemr_1.4.1.tar.gz
Windows binaries: r-devel: diemr_1.4.1.zip, r-release: diemr_1.4.1.zip, r-oldrel: diemr_1.4.1.zip
macOS binaries: r-release (arm64): diemr_1.4.1.tgz, r-oldrel (arm64): diemr_1.4.1.tgz, r-release (x86_64): diemr_1.4.1.tgz, r-oldrel (x86_64): diemr_1.4.1.tgz
Old sources: diemr archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=diemr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.