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A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.
Version: | 0.3-2 |
Imports: | utils |
LinkingTo: | cpp11 |
Suggests: | knitr, rmarkdown, tinytest, netplot, igraph, data.table |
Published: | 2024-10-08 |
DOI: | 10.32614/CRAN.package.epiworldR |
Author: | George Vega Yon [aut, cre], Derek Meyer [aut], Susan Holmes [rev] (JOSS reviewer), Abinash Satapathy [rev] (JOSS reviewer), Carinogurjao [rev], Centers for Disease Control and Prevention [fnd] (Award number 1U01CK000585; 75D30121F00003) |
Maintainer: | George Vega Yon <g.vegayon at gmail.com> |
BugReports: | https://github.com/UofUEpiBio/epiworldR/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/UofUEpiBio/epiworldR, https://uofuepibio.github.io/epiworldR/, https://uofuepibio.github.io/epiworldR-workshop/ |
NeedsCompilation: | yes |
Citation: | epiworldR citation info |
Materials: | README NEWS |
In views: | Epidemiology |
CRAN checks: | epiworldR results |
Reference manual: | epiworldR.pdf |
Vignettes: |
Getting started with epiworldR (source, R code) Implementation details of epiworldR (source) Mixing models (source, R code) Run Multiple (source, R code) |
Package source: | epiworldR_0.3-2.tar.gz |
Windows binaries: | r-devel: epiworldR_0.3-2.zip, r-release: epiworldR_0.3-2.zip, r-oldrel: epiworldR_0.3-2.zip |
macOS binaries: | r-release (arm64): epiworldR_0.3-2.tgz, r-oldrel (arm64): epiworldR_0.3-2.tgz, r-release (x86_64): epiworldR_0.3-2.tgz, r-oldrel (x86_64): epiworldR_0.3-2.tgz |
Old sources: | epiworldR archive |
Reverse imports: | epiworldRShiny |
Please use the canonical form https://CRAN.R-project.org/package=epiworldR to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.