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fspls2: A Package to Find Minimal Transcriptional Signatures

Identifies minimal biomarker signatures for predicting phenotypes from multiomic data. Integrates multiple omics layers, supports internal cross-validation. Supports missing values in predictors and outcomes. Enables model based imputation of uncertain values. Supports continuous, binary, multi-class and ordinal outcomes.

Version: 0.1.0
Depends: R (≥ 4.1.0)
Imports: R6, jsonlite, Matrix, glmnet, tidyr, MASS, ggplot2, pROC, binom, confintr, DBI, RSQLite, methods, tibble, ggrepel, RColorBrewer, data.table
Suggests: knitr, rmarkdown, testthat
Published: 2026-09-12
DOI: 10.32614/CRAN.package.fspls2 (may not be active yet)
Author: Lachlan Coin [aut, cre]
Maintainer: Lachlan Coin <l.coin at imb.uq.edu.au>
License: GPL-2
NeedsCompilation: no
Citation: fspls2 citation info
Materials: NEWS
CRAN checks: fspls2 results

Documentation:

Reference manual: fspls2.html , fspls2.pdf
Vignettes: demo (source, R code)

Downloads:

Package source: fspls2_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): fspls2_0.1.0.tgz, r-release (x86_64): fspls2_0.1.0.tgz, r-oldrel (x86_64): fspls2_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=fspls2 to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.