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An analysis toolkit focused on genes. It mainly includes five features (search, convert, analysis, plot, and export). The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or 'uniprot') to retrieve feature information and 'PubMed'<https://pubmed.ncbi.nlm.nih.gov/> records, to convert id types, to easily handle gene enrichment analysis and publication-level figures, to plot group interaction and export results as sheets in one 'excel' file to easily share and communicate with others.
Version: | 1.2.5 |
Depends: | R (≥ 3.6) |
Imports: | clusterProfiler, dplyr, europepmc, fst, geneset, ggplot2, ggraph, ggvenn, igraph, magrittr, openxlsx, stringr, stringi, tidyr, rlang |
Suggests: | AnnotationDbi, BiocManager, cowplot, ComplexUpset, data.table, fuzzyjoin, forcats, fgsea, futile.logger, ggplotify, ggsci, ggupset, ggrepel, ggridges, ggnewscale, GOplot, GOSemSim, labeling, msigdbr, pheatmap, pracma, tm, treemap, RColorBrewer, rappdirs, RCurl, reshape2, rio, rrvgo, scales, stats, testthat (≥ 3.0.0), tibble, wordcloud, knitr, rmarkdown, XML, xml2, httr |
Published: | 2023-09-07 |
Author: | Yunze Liu [aut, cre] |
Maintainer: | Yunze Liu <jieandze1314 at gmail.com> |
BugReports: | https://github.com/GangLiLab/genekitr/issues |
License: | GPL-3 |
URL: | https://www.genekitr.fun/ |
NeedsCompilation: | no |
Materials: | README ChangeLog |
CRAN checks: | genekitr results |
Reference manual: | genekitr.pdf |
Package source: | genekitr_1.2.5.tar.gz |
Windows binaries: | r-devel: genekitr_1.2.5.zip, r-release: genekitr_1.2.5.zip, r-oldrel: genekitr_1.2.5.zip |
macOS binaries: | r-release (arm64): genekitr_1.2.5.tgz, r-oldrel (arm64): genekitr_1.2.5.tgz, r-release (x86_64): genekitr_1.2.5.tgz, r-oldrel (x86_64): genekitr_1.2.5.tgz |
Old sources: | genekitr archive |
Reverse imports: | MIRit |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.