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Methods and tools for the analysis of Genome Wide Identity-by-Descent ('gwid') mapping data, focusing on testing whether there is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants in cases compared to controls, which is crucial for identifying rare variants. To enhance its analytical power, 'gwid' incorporates a Sliding Window Approach, allowing for the detection and analysis of signals from multiple Single Nucleotide Polymorphisms (SNPs).
| Version: | 0.3.0 |
| Imports: | data.table, gdsfmt, SNPRelate, Matrix, ggplot2, plotly, utils, stats, RcppRoll, methods, piggyback, shiny, lattice, grid |
| Suggests: | knitr, magrittr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-09-03 |
| DOI: | 10.32614/CRAN.package.gwid |
| Author: | Soroush Mahmoudiandehkordi [aut, cre], Steven J Schrodi [aut], Mehdi Maadooliat [aut] |
| Maintainer: | Soroush Mahmoudiandehkordi <soroushmdg at gmail.com> |
| BugReports: | https://github.com/soroushmdg/gwid/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/soroushmdg/gwid, https://soroushmdg.github.io/gwid/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | gwid results |
| Reference manual: | gwid.pdf |
| Package source: | gwid_0.3.0.tar.gz |
| Windows binaries: | r-devel: gwid_0.3.0.zip, r-release: gwid_0.3.0.zip, r-oldrel: gwid_0.3.0.zip |
| macOS binaries: | r-release (arm64): gwid_0.3.0.tgz, r-oldrel (arm64): gwid_0.3.0.tgz, r-release (x86_64): gwid_0.3.0.tgz, r-oldrel (x86_64): gwid_0.3.0.tgz |
| Old sources: | gwid archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.