The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
A comprehensive suite of tools for managing, processing, and analyzing data from the IFCB. I R FlowCytobot ('iRfcb') supports quality control, geospatial analysis, and preparation of IFCB data for publication in databases like <https://www.gbif.org>, <https://www.obis.org>, <https://emodnet.ec.europa.eu/en>, <https://shark.smhi.se/>, and <https://www.ecotaxa.org>. The package integrates with the MATLAB 'ifcb-analysis' tool, which is described in Sosik and Olson (2007) <doi:10.4319/lom.2007.5.204>, and provides features for working with raw, manually classified, and machine learning–classified image datasets. Key functionalities include image extraction, particle size distribution analysis, taxonomic data handling, and biomass concentration calculations, essential for plankton research.
Version: | 0.4.3 |
Imports: | zip, lifecycle, shiny, stringr, dplyr, sf, reticulate (≥ 1.41.0), tidyr, ggplot2, readr, worrms, png, R.matlab, curl, lubridate |
Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), fs, mockery, shinytest2 |
Published: | 2025-03-15 |
DOI: | 10.32614/CRAN.package.iRfcb |
Author: | Anders Torstensson
|
Maintainer: | Anders Torstensson <anders.torstensson at smhi.se> |
License: | MIT + file LICENSE |
URL: | https://europeanifcbgroup.github.io/iRfcb/, https://github.com/EuropeanIFCBGroup/iRfcb |
NeedsCompilation: | no |
Citation: | iRfcb citation info |
Materials: | README |
CRAN checks: | iRfcb results |
Reference manual: | iRfcb.pdf |
Vignettes: |
iRfcb Introduction (source, R code) Prepare IFCB Images for EcoTaxa (source, R code) Sharing Annotated IFCB Images (source, R code) Handling MATLAB Results (source, R code) Quality Control of IFCB Data (source, R code) |
Package source: | iRfcb_0.4.3.tar.gz |
Windows binaries: | r-devel: iRfcb_0.4.3.zip, r-release: iRfcb_0.4.3.zip, r-oldrel: iRfcb_0.4.3.zip |
macOS binaries: | r-devel (arm64): not available, r-release (arm64): not available, r-oldrel (arm64): not available, r-devel (x86_64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Please use the canonical form https://CRAN.R-project.org/package=iRfcb to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.