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An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <https://cran.r-project.org/package=rio>.
Version: | 0.1.1 |
Depends: | R (≥ 4.0) |
Imports: | R6 (≥ 2.5.0), data.table (≥ 1.13.2), stringr (≥ 1.4.0), purrr (≥ 0.3.4), jsonlite (≥ 1.7.1), rio (≥ 0.5.16), tibble (≥ 3.0.4), dplyr (≥ 1.0.2), magrittr (≥ 1.5), tidyr (≥ 1.1.2), elastic (≥ 1.1.0), Biostrings, Rsamtools, rtracklayer |
Suggests: | ggplot2 (≥ 3.3.2), readr (≥ 1.4.0), xml2 (≥ 1.3.2), yaml (≥ 2.2.1), testthat (≥ 3.0.0), rmarkdown (≥ 2.5), knitr (≥ 1.30) |
Published: | 2021-01-28 |
DOI: | 10.32614/CRAN.package.kibior |
Author: | Régis Ongaro-Carcy [aut, cre, ctb], Arnaud Droit [fnd] |
Maintainer: | Régis Ongaro-Carcy <regis.ongaro-carcy2 at crchudequebec.ulaval.ca> |
BugReports: | https://github.com/regisoc/kibior/issues |
License: | GPL-2 |
URL: | https://github.com/regisoc/kibior |
NeedsCompilation: | no |
Citation: | kibior citation info |
Materials: | README |
CRAN checks: | kibior results |
Reference manual: | kibior.pdf |
Vignettes: |
kibior_biological_examples kibior_introduction |
Package source: | kibior_0.1.1.tar.gz |
Windows binaries: | r-devel: kibior_0.1.1.zip, r-release: kibior_0.1.1.zip, r-oldrel: kibior_0.1.1.zip |
macOS binaries: | r-release (arm64): kibior_0.1.1.tgz, r-oldrel (arm64): kibior_0.1.1.tgz, r-release (x86_64): kibior_0.1.1.tgz, r-oldrel (x86_64): kibior_0.1.1.tgz |
Old sources: | kibior archive |
Please use the canonical form https://CRAN.R-project.org/package=kibior to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.