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Implements methods to normalize multiplexed imaging data, including statistical metrics and visualizations to quantify technical variation in this data type. Reference for methods listed here: Harris, C., Wrobel, J., & Vandekar, S. (2022). mxnorm: An R Package to Normalize Multiplexed Imaging Data. Journal of Open Source Software, 7(71), 4180, <doi:10.21105/joss.04180>.
Version: | 1.0.3 |
Depends: | R (≥ 3.5.0) |
Imports: | magrittr, dplyr, rlang, fda, stats, data.table, reticulate, caret, e1071, ggplot2, tidyr, uwot, lme4, stringr, KernSmooth, kSamples, psych, fossil, glue, methods |
Suggests: | knitr, janitor (≥ 2.1.0), testthat (≥ 3.0.0), rmarkdown, markdown, covr |
Published: | 2023-05-01 |
DOI: | 10.32614/CRAN.package.mxnorm |
Author: | Coleman Harris [aut, cre] |
Maintainer: | Coleman Harris <coleman.r.harris at vanderbilt.edu> |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | mxnorm results |
Reference manual: | mxnorm.pdf |
Vignettes: |
mxnorm-vignette1 |
Package source: | mxnorm_1.0.3.tar.gz |
Windows binaries: | r-devel: mxnorm_1.0.3.zip, r-release: mxnorm_1.0.3.zip, r-oldrel: mxnorm_1.0.3.zip |
macOS binaries: | r-release (arm64): mxnorm_1.0.3.tgz, r-oldrel (arm64): mxnorm_1.0.3.tgz, r-release (x86_64): mxnorm_1.0.3.tgz, r-oldrel (x86_64): mxnorm_1.0.3.tgz |
Old sources: | mxnorm archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.