The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.
| Version: | 4.0.5 |
| Depends: | R (≥ 3.5.0) |
| Imports: | AnnotationDbi, corpcor, data.table, dplyr, genefilter, graph, graphite, glmnet, glassoFast, httr, igraph, magrittr, Matrix, msigdbr, org.Hs.eg.db, quadprog, RCy3, reshape2, rlang, Rcpp (≥ 1.0.2) |
| LinkingTo: | Rcpp, RcppEigen |
| Suggests: | knitr, MASS, rmarkdown |
| Published: | 2023-11-14 |
| DOI: | 10.32614/CRAN.package.netgsa |
| Author: | Michael Hellstern [aut, cre], Ali Shojaie [aut], Jing Ma [aut], Kun Yue [aut] |
| Maintainer: | Michael Hellstern <mikeh1 at uw.edu> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/mikehellstern/netgsa |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| In views: | Omics |
| CRAN checks: | netgsa results |
| Reference manual: | netgsa.pdf |
| Vignettes: |
Introduction to netgsa |
| Package source: | netgsa_4.0.5.tar.gz |
| Windows binaries: | r-devel: netgsa_4.0.5.zip, r-release: netgsa_4.0.5.zip, r-oldrel: netgsa_4.0.5.zip |
| macOS binaries: | r-release (arm64): netgsa_4.0.5.tgz, r-oldrel (arm64): netgsa_4.0.5.tgz, r-release (x86_64): netgsa_4.0.5.tgz, r-oldrel (x86_64): netgsa_4.0.5.tgz |
| Old sources: | netgsa archive |
Please use the canonical form https://CRAN.R-project.org/package=netgsa to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.