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neutralitytestr: Test for a Neutral Evolutionary Model in Cancer Sequencing Data

Package takes frequencies of mutations as reported by high throughput sequencing data from cancer and fits a theoretical neutral model of tumour evolution. Package outputs summary statistics and contains code for plotting the data and model fits. See Williams et al 2016 <doi:10.1038/ng.3489> and Williams et al 2017 <doi:10.1101/096305> for further details of the method.

Version: 0.0.3
Depends: R (≥ 3.4)
Imports: dplyr, ggplot2, scales, pracma, ggpmisc, cowplot
Suggests: knitr, rmarkdown, testthat
Published: 2021-02-16
DOI: 10.32614/CRAN.package.neutralitytestr
Author: Marc Williams [aut, cre]
Maintainer: Marc Williams <marcjwilliams1 at gmail.com>
BugReports: https://github.com/marcjwilliams1/neutralitytestr/issues
License: MIT + file LICENSE
URL: https://github.com/marcjwilliams1/neutralitytestr
NeedsCompilation: no
Materials: README NEWS
CRAN checks: neutralitytestr results

Documentation:

Reference manual: neutralitytestr.pdf
Vignettes: neutralitytestr: Testing a neutral evolutionary model on cancer sequencing data

Downloads:

Package source: neutralitytestr_0.0.3.tar.gz
Windows binaries: r-devel: neutralitytestr_0.0.3.zip, r-release: neutralitytestr_0.0.3.zip, r-oldrel: neutralitytestr_0.0.3.zip
macOS binaries: r-release (arm64): neutralitytestr_0.0.3.tgz, r-oldrel (arm64): neutralitytestr_0.0.3.tgz, r-release (x86_64): neutralitytestr_0.0.3.tgz, r-oldrel (x86_64): neutralitytestr_0.0.3.tgz
Old sources: neutralitytestr archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.