ogrdbstats: Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics

Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of 'novel' germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.

Version:	0.5.2
Depends:	R (≥ 2.10)
Imports:	dplyr (≥ 0.8.3), ggplot2 (≥ 3.2.1), magrittr, tigger (≥ 0.4.0), alakazam (≥ 0.3.0), stringr (≥ 1.4.0), data.table, gridExtra (≥ 2.3), tidyr (≥ 1.0.0), stringdist (≥ 0.9.5.2), RColorBrewer (≥ 1.1-2), Biostrings (≥ 2.52.0), argparser (≥ 0.4), ComplexHeatmap, bookdown, scales
Suggests:	knitr, rmarkdown
Published:	2024-11-03
DOI:	10.32614/CRAN.package.ogrdbstats
Author:	William Lees [aut, cre]
Maintainer:	William Lees <william at lees.org.uk>
BugReports:	https://github.com/airr-community/ogrdbstats/issues
License:	CC BY-SA 4.0
URL:	https://github.com/airr-community/ogrdbstats
NeedsCompilation:	no
Materials:	NEWS
CRAN checks:	ogrdbstats results

Documentation:

Reference manual:	ogrdbstats.pdf
Vignettes:	Using ogrdbstats (source, R code)

Downloads:

Package source:	ogrdbstats_0.5.2.tar.gz
Windows binaries:	r-devel: ogrdbstats_0.5.2.zip, r-release: ogrdbstats_0.5.2.zip, r-oldrel: ogrdbstats_0.5.2.zip
macOS binaries:	r-release (arm64): ogrdbstats_0.5.2.tgz, r-oldrel (arm64): ogrdbstats_0.5.2.tgz, r-release (x86_64): ogrdbstats_0.5.2.tgz, r-oldrel (x86_64): ogrdbstats_0.5.2.tgz
Old sources:	ogrdbstats archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ogrdbstats to link to this page.