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Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
Version: | 1.1.0 |
Depends: | R (≥ 4.0), ggplot2 (≥ 3.4.0) |
Imports: | alakazam (≥ 1.3.0), dplyr (≥ 1.0.0), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, stats, stringi, tidyr (≥ 1.1.0), utils |
Suggests: | knitr, rmarkdown, testthat |
Published: | 2023-10-10 |
DOI: | 10.32614/CRAN.package.tigger |
Author: | Daniel Gadala-Maria [aut], Susanna Marquez [aut, cre], Moriah Cohen [aut], Jason Vander Heiden [aut], Gur Yaari [aut], Steven Kleinstein [aut, cph] |
Maintainer: | Susanna Marquez <susanna.marquez at yale.edu> |
BugReports: | https://bitbucket.org/kleinstein/tigger/issues |
License: | AGPL-3 |
URL: | http://tigger.readthedocs.io |
NeedsCompilation: | no |
Citation: | tigger citation info |
Materials: | README NEWS |
CRAN checks: | tigger results |
Reference manual: | tigger.pdf |
Vignettes: |
Polymorphism detection and genotyping |
Package source: | tigger_1.1.0.tar.gz |
Windows binaries: | r-devel: tigger_1.1.0.zip, r-release: tigger_1.1.0.zip, r-oldrel: tigger_1.1.0.zip |
macOS binaries: | r-release (arm64): tigger_1.1.0.tgz, r-oldrel (arm64): tigger_1.1.0.tgz, r-release (x86_64): tigger_1.1.0.tgz, r-oldrel (x86_64): tigger_1.1.0.tgz |
Old sources: | tigger archive |
Reverse imports: | ogrdbstats |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.