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phylosignal: Exploring the Phylogenetic Signal in Continuous Traits

A collection of tools to explore the phylogenetic signal in univariate and multivariate data. The package provides functions to plot traits data against a phylogenetic tree, different measures and tests for the phylogenetic signal, methods to describe where the signal is located and a phylogenetic clustering method.

Version: 1.3.1
Imports: Rcpp (≥ 0.11.0), adephylo, igraph, ape, phylobase, boot, DBI, graphics, grDevices, methods, stats, utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr, rmarkdown
Published: 2023-10-12
DOI: 10.32614/CRAN.package.phylosignal
Author: Francois Keck
Maintainer: Francois Keck <francois.keck at gmail.com>
License: GPL-3
NeedsCompilation: yes
Citation: phylosignal citation info
Materials: README
In views: Phylogenetics
CRAN checks: phylosignal results

Documentation:

Reference manual: phylosignal.pdf
Vignettes: Package overview
Plotting functions

Downloads:

Package source: phylosignal_1.3.1.tar.gz
Windows binaries: r-devel: phylosignal_1.3.1.zip, r-release: phylosignal_1.3.1.zip, r-oldrel: phylosignal_1.3.1.zip
macOS binaries: r-release (arm64): phylosignal_1.3.1.tgz, r-oldrel (arm64): phylosignal_1.3.1.tgz, r-release (x86_64): phylosignal_1.3.1.tgz, r-oldrel (x86_64): phylosignal_1.3.1.tgz
Old sources: phylosignal archive

Reverse dependencies:

Reverse suggests: ecostats, phylosem

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.