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Retrieve and analyze biomedical literature from 'PubMed' and the wider 'NIH'/'NLM' data stack through a single, PMID-centered interface. A PubMed search resolves to a set of PMIDs, which can be used to retrieve article metadata and abstracts, author affiliations, 'iCite' citation data and links, 'PubTator3' entity and relation annotations, and open-access full text from 'PMC'. A local analysis layer operates on the retrieved tables, supporting corpus expansion through citation links, citation network construction, sentence-level entity co-occurrence, inspection of relation evidence, and 'MeSH' descriptor keyness.
| Version: | 1.1.0 |
| Depends: | R (≥ 3.5) |
| Imports: | rentrez, textshape, xml2, data.table, httr, pbapply, jsonlite, rappdirs, textpress, parallel, tools, utils |
| Suggests: | knitr, rmarkdown, DT, dplyr, testthat (≥ 3.0.0) |
| Published: | 2026-06-24 |
| DOI: | 10.32614/CRAN.package.puremoe |
| Author: | Jason Timm [aut, cre] |
| Maintainer: | Jason Timm <JaTimm at salud.unm.edu> |
| BugReports: | https://github.com/jaytimm/puremoe/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/jaytimm/puremoe, https://jaytimm.github.io/puremoe/ |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | puremoe results |
| Reference manual: | puremoe.html , puremoe.pdf |
| Package source: | puremoe_1.1.0.tar.gz |
| Windows binaries: | r-devel: puremoe_1.1.0.zip, r-release: puremoe_1.1.0.zip, r-oldrel: puremoe_1.0.4.zip |
| macOS binaries: | r-release (arm64): puremoe_1.1.0.tgz, r-oldrel (arm64): puremoe_1.1.0.tgz, r-release (x86_64): puremoe_1.1.0.tgz, r-oldrel (x86_64): puremoe_1.1.0.tgz |
| Old sources: | puremoe archive |
Please use the canonical form https://CRAN.R-project.org/package=puremoe to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.