r2sbml: Read 'SBML' Models and Convert Them to Simulation Code

Reads models in the Systems Biology Markup Language ('SBML') (Hucka et al. (2003) <doi:10.1093/bioinformatics/btg015>) through the bundled 'libSBML' library (Bornstein et al. (2008) <doi:10.1093/bioinformatics/btn051>). Lists a model's species, parameters, compartments, reactions, rules, events and function definitions, and converts the model into ready-to-run simulation code for 'deSolve', 'mrgsolve', 'rxode2', 'MATLAB', 'Julia' or 'ubiquity'. Models are read, not modified.

Version:	0.1.0
Imports:	Rcpp (≥ 0.12.6)
LinkingTo:	Rcpp
Suggests:	deSolve, knitr, mrgsolve, rmarkdown, rxode2, testthat (≥ 3.0.0), ubiquity
Published:	2026-11-03
DOI:	10.32614/CRAN.package.r2sbml (may not be active yet)
Author:	Satyaprakash Nayak [aut, cre, cph], Sarah M. Keating [ctb] (Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp), Frank T. Bergmann [ctb] (Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp), Lucian P. Smith [ctb] (Author of 'libSBML'), Brett G. Olivier [ctb] (Author of 'libSBML'), Akiya Jouraku [ctb] (Author of 'libSBML'), Michael Hucka [ctb] (Author of 'libSBML'), Ben Bornstein [ctb] (Author of 'libSBML'), Jeroen Ooms [ctb] (Windows build support), California Institute of Technology [cph] (Copyright holder of 'libSBML', 2002-2020), EMBL European Bioinformatics Institute [cph] (Copyright holder of 'libSBML', 2009-2018), University of Heidelberg [cph] (Copyright holder of 'libSBML', 2013-2020), University College London [cph] (Copyright holder of 'libSBML', 2020), Japan Science and Technology Agency [cph] (Copyright holder of 'libSBML', 2002-2005), Gilles Vollant [cph] (Author of MiniZip, bundled with 'libSBML'), Mathias Svensson [cph] (Contributor to MiniZip, bundled with 'libSBML'), Even Rouault [cph] (Contributor to MiniZip, bundled with 'libSBML'), Nathan Moinvaziri [cph] (Contributor to MiniZip, bundled with 'libSBML'), Terry Thorsen [cph] (Contributor to MiniZip, bundled with 'libSBML'), Info-ZIP [cph] (Copyright holder of encryption code in MiniZip, bundled with 'libSBML'), Ludwig Schwardt [cph] (Author of the zlib iostream wrappers bundled with 'libSBML'), Kevin Ruland [cph] (Author of the zlib iostream wrappers bundled with 'libSBML'), M. Petra Baranski [cph] (Author of 'maddy', bundled with 'libSBML'), Tim Gromeyer [cph] (Author of 'html2md', bundled with 'libSBML')
Maintainer:	Satyaprakash Nayak <satyaprakash.nayak at gmail.com>
BugReports:	https://github.com/sn248/r2sbml/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright:	See file inst/COPYRIGHTS r2sbml copyright details
URL:	https://sn248.github.io/r2sbml/, https://github.com/sn248/r2sbml
NeedsCompilation:	yes
SystemRequirements:	cmake, libxml2, libbz2
Language:	en-GB
Materials:	README, NEWS
CRAN checks:	r2sbml results [issues need fixing before 2026-11-24]

Documentation:

Reference manual:	r2sbml.html , r2sbml.pdf
Vignettes:	Limitations and unimplemented behaviour (source, R code) Getting started with r2sbml (source, R code)

Downloads:

Package source:	r2sbml_0.1.0.tar.gz
Windows binaries:	r-devel: not available, r-release: r2sbml_0.1.0.zip, r-oldrel: r2sbml_0.1.0.zip
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

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