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Complete work flow for the analysis of pharmacokinetic pharmacodynamic (PKPD), physiologically-based pharmacokinetic (PBPK) and systems pharmacology models including: creation of ordinary differential equation-based models, pooled parameter estimation, individual/population based simulations, rule-based simulations for clinical trial design and modeling assays, deployment with a customizable 'Shiny' app, and non-compartmental analysis. System-specific analysis templates can be generated and each element includes integrated reporting with 'PowerPoint' and 'Word'.
Version: | 2.0.3 |
Depends: | R (≥ 3.5.0) |
Imports: | cli, deSolve, dplyr (≥ 1.0.0), digest, doParallel, flextable, foreach, ggplot2, knitr, magrittr, MASS, onbrand (≥ 1.0.2), optimx, PKNCA, pso, readxl, rmarkdown, rhandsontable, scales, stats, stringr, shiny |
Suggests: | GA, GGally, gridGraphics, gridExtra, grid, officer, webshot, ggrepel, rstudioapi, testthat |
Published: | 2024-03-08 |
DOI: | 10.32614/CRAN.package.ubiquity |
Author: | John Harrold [aut, cre] |
Maintainer: | John Harrold <john.m.harrold at gmail.com> |
BugReports: | https://github.com/john-harrold/ubiquity/issues |
License: | BSD_2_clause + file LICENSE |
URL: | https://ubiquity.tools/rworkflow |
NeedsCompilation: | no |
SystemRequirements: | Perl |
Citation: | ubiquity citation info |
Materials: | README NEWS |
In views: | Pharmacokinetics |
CRAN checks: | ubiquity results |
Reference manual: | ubiquity.pdf |
Vignettes: |
Deployment Estimation Language Report Generation Simulation Titration/Rule-Based Simulations |
Package source: | ubiquity_2.0.3.tar.gz |
Windows binaries: | r-devel: ubiquity_2.0.3.zip, r-release: ubiquity_2.0.3.zip, r-oldrel: ubiquity_2.0.3.zip |
macOS binaries: | r-release (arm64): ubiquity_2.0.3.tgz, r-oldrel (arm64): ubiquity_2.0.3.tgz, r-release (x86_64): ubiquity_2.0.3.tgz, r-oldrel (x86_64): ubiquity_2.0.3.tgz |
Old sources: | ubiquity archive |
Reverse suggests: | ruminate |
Please use the canonical form https://CRAN.R-project.org/package=ubiquity to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.