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Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <https://github.com/fumi-github/scPloidy>.
Version: | 0.6.2 |
Depends: | R (≥ 3.5.0) |
Imports: | dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools, nimble, rlang, Rsamtools, tibble, tidyr, utils |
Suggests: | gplots, IRanges, knitr, readr, rmarkdown, testthat (≥ 3.0.0) |
Published: | 2024-04-28 |
DOI: | 10.32614/CRAN.package.scPloidy |
Author: | Fumihiko Takeuchi |
Maintainer: | Fumihiko Takeuchi <fumihiko at takeuchi.name> |
BugReports: | https://github.com/fumi-github/scPloidy/issues |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | scPloidy results |
Reference manual: | scPloidy.pdf |
Vignettes: |
CNV intro |
Package source: | scPloidy_0.6.2.tar.gz |
Windows binaries: | r-devel: scPloidy_0.6.2.zip, r-release: scPloidy_0.6.2.zip, r-oldrel: scPloidy_0.6.2.zip |
macOS binaries: | r-release (arm64): scPloidy_0.6.2.tgz, r-oldrel (arm64): scPloidy_0.6.2.tgz, r-release (x86_64): scPloidy_0.6.2.tgz, r-oldrel (x86_64): scPloidy_0.6.2.tgz |
Old sources: | scPloidy archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.