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scPloidy: Infer Ploidy of Single Cells

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <https://github.com/fumi-github/scPloidy>.

Version: 0.6.2
Depends: R (≥ 3.5.0)
Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools, nimble, rlang, Rsamtools, tibble, tidyr, utils
Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-04-28
DOI: 10.32614/CRAN.package.scPloidy
Author: Fumihiko Takeuchi ORCID iD [aut, cre]
Maintainer: Fumihiko Takeuchi <fumihiko at takeuchi.name>
BugReports: https://github.com/fumi-github/scPloidy/issues
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: scPloidy results

Documentation:

Reference manual: scPloidy.pdf
Vignettes: CNV
intro

Downloads:

Package source: scPloidy_0.6.2.tar.gz
Windows binaries: r-devel: scPloidy_0.6.2.zip, r-release: scPloidy_0.6.2.zip, r-oldrel: scPloidy_0.6.2.zip
macOS binaries: r-release (arm64): scPloidy_0.6.2.tgz, r-oldrel (arm64): scPloidy_0.6.2.tgz, r-release (x86_64): scPloidy_0.6.2.tgz, r-oldrel (x86_64): scPloidy_0.6.2.tgz
Old sources: scPloidy archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.