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statgenMPP: QTL Mapping for Multi Parent Populations

For Multi Parent Populations (MPP) Identity By Descend (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. (<doi:10.1007/s00122-021-03919-7>).

Version: 1.0.3
Depends: R (≥ 3.6), statgenGWAS (≥ 1.0.9)
Imports: data.table, foreach, ggplot2, gridExtra, LMMsolver (≥ 1.0.5), Matrix, rlang, scales, spam, statgenIBD (≥ 1.0.5), stringi
Suggests: rmarkdown, knitr, tinytest
Published: 2024-10-29
DOI: 10.32614/CRAN.package.statgenMPP
Author: Martin Boer ORCID iD [aut], Wenhao Li ORCID iD [aut], Bart-Jan van Rossum ORCID iD [aut, cre], Fred van Eeuwijk ORCID iD [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
License: GPL (≥ 3)
NeedsCompilation: no
Citation: statgenMPP citation info
Materials: README NEWS
In views: Agriculture
CRAN checks: statgenMPP results

Documentation:

Reference manual: statgenMPP.pdf
Vignettes: QTL Mapping in Multi-Parent Populations (source, R code)

Downloads:

Package source: statgenMPP_1.0.3.tar.gz
Windows binaries: r-devel: statgenMPP_1.0.3.zip, r-release: statgenMPP_1.0.3.zip, r-oldrel: statgenMPP_1.0.3.zip
macOS binaries: r-release (arm64): statgenMPP_1.0.3.tgz, r-oldrel (arm64): statgenMPP_1.0.3.tgz, r-release (x86_64): statgenMPP_1.0.3.tgz, r-oldrel (x86_64): statgenMPP_1.0.3.tgz
Old sources: statgenMPP archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.