statgenIBD: Calculation of IBD Probabilities

For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

Version:	1.0.7
Depends:	R (≥ 3.6)
Imports:	data.table, ggplot2, Matrix, rlang, Rcpp, statgenGWAS (≥ 1.0.9), stringi
LinkingTo:	Rcpp, RcppArmadillo
Suggests:	rmarkdown, knitr, tinytest
Published:	2024-02-02
DOI:	10.32614/CRAN.package.statgenIBD
Author:	Martin Boer [aut], Bart-Jan van Rossum [aut, cre], Wenhao Li [ctb], Johannes Kruisselbrink [ctb]
Maintainer:	Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
BugReports:	https://github.com/Biometris/statgenIBD/issues
License:	GPL-2 | GPL-3 [expanded from: GPL]
URL:	https://biometris.github.io/statgenIBD/index.html, https://github.com/Biometris/statgenIBD/
NeedsCompilation:	yes
Materials:	README NEWS
In views:	Agriculture
CRAN checks:	statgenIBD results

Documentation:

Reference manual:	statgenIBD.pdf
Vignettes:	IBD calculations using statgenIBD IBD probabilities file format

Downloads:

Package source:	statgenIBD_1.0.7.tar.gz
Windows binaries:	r-devel: statgenIBD_1.0.7.zip, r-release: statgenIBD_1.0.7.zip, r-oldrel: statgenIBD_1.0.7.zip
macOS binaries:	r-release (arm64): statgenIBD_1.0.7.tgz, r-oldrel (arm64): statgenIBD_1.0.7.tgz, r-release (x86_64): statgenIBD_1.0.7.tgz, r-oldrel (x86_64): statgenIBD_1.0.7.tgz
Old sources:	statgenIBD archive

Reverse dependencies:

Reverse imports:

statgenMPP

Linking:

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