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statgenIBD: Calculation of IBD Probabilities

For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

Version: 1.0.7
Depends: R (≥ 3.6)
Imports: data.table, ggplot2, Matrix, rlang, Rcpp, statgenGWAS (≥ 1.0.9), stringi
LinkingTo: Rcpp, RcppArmadillo
Suggests: rmarkdown, knitr, tinytest
Published: 2024-02-02
DOI: 10.32614/CRAN.package.statgenIBD
Author: Martin Boer ORCID iD [aut], Bart-Jan van Rossum ORCID iD [aut, cre], Wenhao Li ORCID iD [ctb], Johannes Kruisselbrink ORCID iD [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
BugReports: https://github.com/Biometris/statgenIBD/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://biometris.github.io/statgenIBD/index.html, https://github.com/Biometris/statgenIBD/
NeedsCompilation: yes
Materials: README NEWS
In views: Agriculture
CRAN checks: statgenIBD results

Documentation:

Reference manual: statgenIBD.pdf
Vignettes: IBD calculations using statgenIBD
IBD probabilities file format

Downloads:

Package source: statgenIBD_1.0.7.tar.gz
Windows binaries: r-devel: statgenIBD_1.0.7.zip, r-release: statgenIBD_1.0.7.zip, r-oldrel: statgenIBD_1.0.7.zip
macOS binaries: r-release (arm64): statgenIBD_1.0.7.tgz, r-oldrel (arm64): statgenIBD_1.0.7.tgz, r-release (x86_64): statgenIBD_1.0.7.tgz, r-oldrel (x86_64): statgenIBD_1.0.7.tgz
Old sources: statgenIBD archive

Reverse dependencies:

Reverse imports: statgenMPP

Linking:

Please use the canonical form https://CRAN.R-project.org/package=statgenIBD to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.