The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

symphony: Efficient and Precise Single-Cell Reference Atlas Mapping

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.

Version: 0.1.1
Depends: R (≥ 3.5)
Imports: methods, Rcpp, harmony, uwot, irlba, class, purrr, dplyr, ggplot2, stats, utils, magrittr, data.table, tibble, Matrix, tidyr, rlang, RColorBrewer, RANN
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat, ggthemes, ggrastr, ggrepel
Published: 2023-01-16
DOI: 10.32614/CRAN.package.symphony
Author: Joyce Kang ORCID iD [aut, cre], Ilya Korsunsky ORCID iD [aut], Soumya Raychaudhuri ORCID iD [aut]
Maintainer: Joyce Kang <joyce_kang at hms.harvard.edu>
License: GPL (≥ 3)
NeedsCompilation: yes
Materials: README
CRAN checks: symphony results

Documentation:

Reference manual: symphony.pdf
Vignettes: Quickstart PBMCs Tutorial

Downloads:

Package source: symphony_0.1.1.tar.gz
Windows binaries: r-devel: symphony_0.1.1.zip, r-release: symphony_0.1.1.zip, r-oldrel: symphony_0.1.1.zip
macOS binaries: r-release (arm64): symphony_0.1.1.tgz, r-oldrel (arm64): symphony_0.1.1.tgz, r-release (x86_64): symphony_0.1.1.tgz, r-oldrel (x86_64): symphony_0.1.1.tgz
Old sources: symphony archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=symphony to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.