tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis. See Zyla et al (2019) <doi:10.1093/bioinformatics/btz447>.

Version:	0.50.13
Depends:	R (≥ 2.10)
Imports:	beeswarm, tagcloud, XML, methods, plotwidgets, RColorBrewer, gplots, tibble, pheatmap, ggplot2, tidyr, purrr, rlang, tidyselect, ggrepel
Suggests:	testthat, knitr, rmarkdown, dplyr, pander, cowplot
Published:	2023-03-31
DOI:	10.32614/CRAN.package.tmod
Author:	January Weiner [aut, cre]
Maintainer:	January Weiner <january.weiner at gmail.com>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
URL:	https://tmod.online, https://github.com/january3/tmod/, https://january3.github.io/tmod/
NeedsCompilation:	no
Citation:	tmod citation info
Materials:	README ChangeLog
In views:	Omics
CRAN checks:	tmod results

Documentation:

Reference manual:	tmod.pdf
Vignettes:	tmod: Analysis of Gene Set Enrichments

Downloads:

Package source:	tmod_0.50.13.tar.gz
Windows binaries:	r-devel: tmod_0.50.13.zip, r-release: tmod_0.50.13.zip, r-oldrel: tmod_0.50.13.zip
macOS binaries:	r-release (arm64): tmod_0.50.13.tgz, r-oldrel (arm64): tmod_0.50.13.tgz, r-release (x86_64): tmod_0.50.13.tgz, r-oldrel (x86_64): tmod_0.50.13.tgz
Old sources:	tmod archive

Reverse dependencies:

Reverse imports:

GeneSelectR

Linking:

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