CRAN Package Check Results for Maintainer ‘Karl Broman <broman at wisc.edu>’

Last updated on 2025-12-08 19:50:38 CET.

Package	WARN	NOTE	OK
aRxiv			13
broman	1		12
chromer			13
lineup			13
lineup2			13
mbmixture			13
mmconvert			13
negenes	1		12
qtl	3	3	7
qtl2		3	10
qtl2convert			13
qtl2fst			13
qtlbook			13
qtlcharts			13
regress			13
simcross			13
xoi	1		12

Package aRxiv

Current CRAN status: OK: 13

Package broman

Current CRAN status: WARN: 1, OK: 12

Version: 0.90
Check: whether package can be installed
Result: WARN Found the following significant warnings: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/PrtUtil.h:35:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/broman.Rcheck/00install.out’ for details. * used C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc

Package chromer

Current CRAN status: OK: 13

Package lineup

Current CRAN status: OK: 13

Package lineup2

Current CRAN status: OK: 13

Package mbmixture

Current CRAN status: OK: 13

Package mmconvert

Current CRAN status: OK: 13

Package negenes

Current CRAN status: WARN: 1, OK: 12

Version: 1.2
Check: whether package can be installed
Result: WARN Found the following significant warnings: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/PrtUtil.h:35:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/negenes.Rcheck/00install.out’ for details. * used C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc

Package qtl

Current CRAN status: WARN: 3, NOTE: 3, OK: 7

Version: 1.72
Check: whether package can be installed
Result: WARN Found the following significant warnings: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/PrtUtil.h:35:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qtl.Rcheck/00install.out’ for details. * used C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ * used C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.72
Check: whether package can be installed
Result: WARN Found the following significant warnings: /data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:35:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings] See ‘/data/gannet/ripley/R/packages/tests-clang/qtl.Rcheck/00install.out’ for details. * used C compiler: ‘clang version 21.1.7’ * used C++ compiler: ‘clang version 21.1.7’ Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.72
Check: whether package can be installed
Result: WARN Found the following significant warnings: /data/gannet/ripley/R/R-devel/include/R_ext/PrtUtil.h:35:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp] See ‘/data/gannet/ripley/R/packages/tests-devel/qtl.Rcheck/00install.out’ for details. * used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.72
Check: installed package size
Result: NOTE installed size is 11.5Mb sub-directories of 1Mb or more: R 2.0Mb contrib 3.7Mb doc 3.0Mb libs 1.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package qtl2

Current CRAN status: NOTE: 3, OK: 10

Version: 0.38
Check: installed package size
Result: NOTE installed size is 48.4Mb sub-directories of 1Mb or more: extdata 3.3Mb libs 43.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package qtl2convert

Current CRAN status: OK: 13

Package qtl2fst

Current CRAN status: OK: 13

Package qtlbook

Current CRAN status: OK: 13

Package qtlcharts

Current CRAN status: OK: 13

Package regress

Current CRAN status: OK: 13

Package simcross

Current CRAN status: OK: 13

Package xoi

Current CRAN status: WARN: 1, OK: 12

Version: 0.72
Check: whether package can be installed
Result: WARN Found the following significant warnings: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/PrtUtil.h:35:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/xoi.Rcheck/00install.out’ for details. * used C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc