Last updated on 2025-01-30 16:48:51 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| autoslider.core | 6 | 7 | |
| filters | 13 | ||
| formatters | 13 | ||
| nestcolor | 13 | ||
| random.cdisc.data | 6 | 7 | |
| rlistings | 13 | ||
| rtables | 13 | ||
| rtables.officer | 11 | ||
| teal.modules.clinical | 6 | 2 | 5 |
| tern | 11 | 2 | |
| tern.gee | 13 | ||
| tern.mmrm | 13 | ||
| tern.rbmi | 13 |
Current CRAN status: NOTE: 6, OK: 7
Version: 0.2.3
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 3.1Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 3.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 0.3.16
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
data 5.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 11
Current CRAN status: ERROR: 6, NOTE: 2, OK: 5
Version: 0.9.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
split_choices.Rd: choices_selected
template_coxreg_m.Rd: control_coxreg
template_coxreg_u.Rd: control_coxreg
tm_t_tte.Rd: data_extract_spec, coxph_pairwise, surv_timepoint,
surv_time
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 0.9.1
Check: examples
Result: ERROR
Running examples in ‘teal.modules.clinical-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tm_a_gee
> ### Title: teal Module: Generalized Estimating Equations (GEE) analysis
> ### Aliases: tm_a_gee
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> data <- teal_data()
> data <- within(data, {
+ ADSL <- tmc_ex_adsl
+ ADQS <- tmc_ex_adqs %>%
+ filter(ABLFL != "Y" & ABLFL2 != "Y") %>%
+ mutate(
+ AVISIT = as.factor(AVISIT),
+ AVISITN = rank(AVISITN) %>%
+ as.factor() %>%
+ as.numeric() %>%
+ as.factor(),
+ AVALBIN = AVAL < 50 # Just as an example to get a binary endpoint.
+ ) %>%
+ droplevels()
+ })
> datanames <- c("ADSL", "ADQS")
> datanames(data) <- datanames
Warning: `datanames<-()` was deprecated in teal.data 0.7.0.
ℹ invalid to use `datanames()<-` or `names()<-` on an object of class
`teal_data`. See ?names.teal_data
> join_keys(data) <- default_cdisc_join_keys[datanames]
>
> app <- init(
+ data = data,
+ modules = modules(
+ tm_a_gee(
+ label = "GEE",
+ dataname = "ADQS",
+ aval_var = choices_selected("AVALBIN", fixed = TRUE),
+ id_var = choices_selected(c("USUBJID", "SUBJID"), "USUBJID"),
+ arm_var = choices_selected(c("ARM", "ARMCD"), "ARM"),
+ visit_var = choices_selected(c("AVISIT", "AVISITN"), "AVISIT"),
+ paramcd = choices_selected(
+ choices = value_choices(data[["ADQS"]], "PARAMCD", "PARAM"),
+ selected = "FKSI-FWB"
+ ),
+ cov_var = choices_selected(c("BASE", "AGE", "SEX", "BASE:AVISIT"), NULL)
+ )
+ )
+ )
Initializing tm_a_gee (prototype)
Error in as.list(data@env) :
no slot of name "env" for this object of class "teal_data"
Calls: init -> create_app_id -> as.list
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 0.9.1
Check: examples
Result: ERROR
Running examples in ‘teal.modules.clinical-Ex.R’ failed
The error most likely occurred in:
> ### Name: tm_a_gee
> ### Title: teal Module: Generalized Estimating Equations (GEE) analysis
> ### Aliases: tm_a_gee
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> data <- teal_data()
> data <- within(data, {
+ ADSL <- tmc_ex_adsl
+ ADQS <- tmc_ex_adqs %>%
+ filter(ABLFL != "Y" & ABLFL2 != "Y") %>%
+ mutate(
+ AVISIT = as.factor(AVISIT),
+ AVISITN = rank(AVISITN) %>%
+ as.factor() %>%
+ as.numeric() %>%
+ as.factor(),
+ AVALBIN = AVAL < 50 # Just as an example to get a binary endpoint.
+ ) %>%
+ droplevels()
+ })
> datanames <- c("ADSL", "ADQS")
> datanames(data) <- datanames
Warning: `datanames<-()` was deprecated in teal.data 0.7.0.
ℹ invalid to use `datanames()<-` or `names()<-` on an object of class
`teal_data`. See ?names.teal_data
> join_keys(data) <- default_cdisc_join_keys[datanames]
>
> app <- init(
+ data = data,
+ modules = modules(
+ tm_a_gee(
+ label = "GEE",
+ dataname = "ADQS",
+ aval_var = choices_selected("AVALBIN", fixed = TRUE),
+ id_var = choices_selected(c("USUBJID", "SUBJID"), "USUBJID"),
+ arm_var = choices_selected(c("ARM", "ARMCD"), "ARM"),
+ visit_var = choices_selected(c("AVISIT", "AVISITN"), "AVISIT"),
+ paramcd = choices_selected(
+ choices = value_choices(data[["ADQS"]], "PARAMCD", "PARAM"),
+ selected = "FKSI-FWB"
+ ),
+ cov_var = choices_selected(c("BASE", "AGE", "SEX", "BASE:AVISIT"), NULL)
+ )
+ )
+ )
Initializing tm_a_gee (prototype)
Error in as.list(data@env) :
no slot of name "env" for this object of class "teal_data"
Calls: init -> create_app_id -> as.list
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 0.9.1
Check: examples
Result: ERROR
Running examples in ‘teal.modules.clinical-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tm_a_gee
> ### Title: teal Module: Generalized Estimating Equations (GEE) analysis
> ### Aliases: tm_a_gee
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> data <- teal_data()
Error in selfEnv[[what]] <- args[[what]] :
cannot add bindings to a locked environment
Calls: teal_data ... .local -> <Anonymous> -> eval -> eval -> .nextMethod
Execution halted
Flavor: r-patched-linux-x86_64
Current CRAN status: NOTE: 11, OK: 2
Version: 0.9.7
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘incidence_rate.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.9.7
Check: installed package size
Result: NOTE
installed size is 9.5Mb
sub-directories of 1Mb or more:
doc 5.5Mb
help 2.7Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.9.6
Check: installed package size
Result: NOTE
installed size is 8.5Mb
sub-directories of 1Mb or more:
doc 4.5Mb
help 2.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.