CRAN Package Check Results for Maintainer ‘Marcelo Araya-Salas <marcelo.araya at ucr.ac.cr>’

Last updated on 2025-06-08 01:52:28 CEST.

Package	ERROR	NOTE	OK
baRulho		3	10
dynaSpec			13
NatureSounds		3	10
ohun		3	10
Rraven		3	10
sketchy			13
warbleR	2	3	8

Package baRulho

Current CRAN status: NOTE: 3, OK: 10

Version: 2.1.3
Check: installed package size
Result: NOTE installed size is 7.7Mb sub-directories of 1Mb or more: doc 4.3Mb help 2.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package dynaSpec

Current CRAN status: OK: 13

Package NatureSounds

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.5
Check: installed package size
Result: NOTE installed size is 7.6Mb sub-directories of 1Mb or more: data 4.0Mb doc 3.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package ohun

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.2
Check: installed package size
Result: NOTE installed size is 6.8Mb sub-directories of 1Mb or more: doc 6.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package Rraven

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.14
Check: installed package size
Result: NOTE installed size is 5.5Mb sub-directories of 1Mb or more: doc 5.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package sketchy

Current CRAN status: OK: 13

Package warbleR

Current CRAN status: ERROR: 2, NOTE: 3, OK: 8

Version: 1.1.34
Check: examples
Result: ERROR Running examples in ‘warbleR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: read_wave > ### Title: A wrapper for tuneR's readWave that read sound files listed > ### within selection tables > ### Aliases: read_wave > > ### ** Examples > > { + # write wave files with lower case file extension + data(list = c("Phae.long1")) + writeWave(Phae.long1, file.path(tempdir(), "Phae.long1.wav")) + + # read from selection table + read_wave(X = lbh_selec_table, index = 1, path = tempdir()) + + # from extended selection table + library(NatureSounds) + read_wave(X = lbh.est, index = 1) + + # read WAV + filepath <- system.file("extdata", "recording.wav", package = "bioacoustics") + read_wave(filepath) + + # read MP3 + filepath <- system.file("extdata", "recording.mp3", package = "bioacoustics") + read_wave(filepath) + + # URL file + read_wave(X = "https://www.xeno-canto.org/513948/download") + } This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. Error in curl::curl_fetch_memory(url, handle = handle) : Timeout was reached [www.xeno-canto.org]: Connection timed out after 10017 milliseconds Calls: read_wave ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.34
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘a_warbleR.Rmd’ using rmarkdown --- finished re-building ‘a_warbleR.Rmd’ --- re-building ‘b_annotation_data_format.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/b_annotation_data_format_files/figure-html/annotations_8.22-1.png 400x280 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33814 bytes Input file size = 33940 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21905 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21905 Output IDAT size = 21905 bytes (11909 bytes decrease) Output file size = 21983 bytes (11957 bytes = 35.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/b_annotation_data_format_files/figure-html/annotations_8.23-1.png 400x280 pixels, 8 bits/pixel, 141 colors in palette Input IDAT size = 39721 bytes Input file size = 40282 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39231 Output IDAT size = 39231 bytes (490 bytes decrease) Output file size = 39744 bytes (538 bytes = 1.34% decrease) Quitting from b_annotation_data_format.Rmd:536-550 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `download.file()`: ! cannot open URL 'https://xeno-canto.org/15607/download' --- Backtrace: ▆ 1. └─warbleR::query_xc(qword = "nr:15607", download = TRUE, path = tempdir()) 2. └─warbleR:::.pblapply(...) 3. └─base::lapply(X, FUN, ...) 4. └─warbleR (local) FUN(X[[i]], ...) 5. └─warbleR (local) xcFUN(results, x) 6. └─utils::download.file(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'b_annotation_data_format.Rmd' failed with diagnostics: cannot open URL 'https://xeno-canto.org/15607/download' --- failed re-building ‘b_annotation_data_format.Rmd’ --- re-building ‘c_warbleR_workflow_02.Rmd’ using rmarkdown --- finished re-building ‘c_warbleR_workflow_02.Rmd’ --- re-building ‘d_warbleR_workflow_03.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/d_warbleR_workflow_03_files/figure-html/unnamed-chunk-30-1.png 2200x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 72078 bytes Input file size = 72252 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63781 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63781 Output IDAT size = 63781 bytes (8297 bytes decrease) Output file size = 63859 bytes (8393 bytes = 11.62% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/warbleR.Rcheck/vign_test/warbleR/vignettes/d_warbleR_workflow_03_files/figure-html/unnamed-chunk-31-1.png 2200x1540 pixels, 3x8 bits/pixel, RGB Input IDAT size = 69179 bytes Input file size = 69353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60979 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60979 Output IDAT size = 60979 bytes (8200 bytes decrease) Output file size = 61057 bytes (8296 bytes = 11.96% decrease) --- finished re-building ‘d_warbleR_workflow_03.Rmd’ SUMMARY: processing the following file failed: ‘b_annotation_data_format.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.34
Check: examples
Result: ERROR Running examples in 'warbleR-Ex.R' failed The error most likely occurred in: > ### Name: read_wave > ### Title: A wrapper for tuneR's readWave that read sound files listed > ### within selection tables > ### Aliases: read_wave > > ### ** Examples > > { + # write wave files with lower case file extension + data(list = c("Phae.long1")) + writeWave(Phae.long1, file.path(tempdir(), "Phae.long1.wav")) + + # read from selection table + read_wave(X = lbh_selec_table, index = 1, path = tempdir()) + + # from extended selection table + library(NatureSounds) + read_wave(X = lbh.est, index = 1) + + # read WAV + filepath <- system.file("extdata", "recording.wav", package = "bioacoustics") + read_wave(filepath) + + # read MP3 + filepath <- system.file("extdata", "recording.mp3", package = "bioacoustics") + read_wave(filepath) + + # URL file + read_wave(X = "https://www.xeno-canto.org/513948/download") + } This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. This function is slated for deprecation in future versions. Please use the function read_sound_file() instead. Warning in download.file(url = X, destfile = temp.file, quiet = TRUE, mode = "wb", : URL 'https://xeno-canto.org/513948/download': Timeout of 60 seconds was reached Error in download.file(url = X, destfile = temp.file, quiet = TRUE, mode = "wb", : cannot open URL 'https://www.xeno-canto.org/513948/download' Calls: read_wave -> read_sound_file -> download.file Execution halted Flavor: r-devel-windows-x86_64

Version: 1.1.34
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'a_warbleR.Rmd' using rmarkdown --- finished re-building 'a_warbleR.Rmd' --- re-building 'b_annotation_data_format.Rmd' using rmarkdown Quitting from b_annotation_data_format.Rmd:536-550 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `file()`: ! cannot open the connection to 'https://www.xeno-canto.org/api/2/recordings?query=nr:15607&page=1' --- Backtrace: ▆ 1. └─warbleR::query_xc(qword = "nr:15607", download = TRUE, path = tempdir()) 2. └─warbleR:::.pblapply(...) 3. └─base::lapply(X, FUN, ...) 4. └─warbleR (local) FUN(X[[i]], ...) 5. └─rjson::fromJSON(...) 6. ├─base::paste(readLines(file, warn = FALSE), collapse = "") 7. └─base::readLines(file, warn = FALSE) 8. └─base::file(con, "r") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'b_annotation_data_format.Rmd' failed with diagnostics: cannot open the connection to 'https://www.xeno-canto.org/api/2/recordings?query=nr:15607&page=1' --- failed re-building 'b_annotation_data_format.Rmd' --- re-building 'c_warbleR_workflow_02.Rmd' using rmarkdown --- finished re-building 'c_warbleR_workflow_02.Rmd' --- re-building 'd_warbleR_workflow_03.Rmd' using rmarkdown --- finished re-building 'd_warbleR_workflow_03.Rmd' SUMMARY: processing the following file failed: 'b_annotation_data_format.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.1.34
Check: installed package size
Result: NOTE installed size is 8.7Mb sub-directories of 1Mb or more: doc 6.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64