CRAN Package Check Results for Maintainer ‘Marc A. Suchard <msuchard at ucla.edu>’

Last updated on 2024-11-21 19:53:14 CET.

Package	WARN	NOTE	OK
BeastJar		8	5
BrokenAdaptiveRidge		3	10
Cyclops		7	6
IterativeHardThresholding		3	10
MultiBD	1	12
RcppXsimd		13

Package BeastJar

Current CRAN status: NOTE: 8, OK: 5

Version: 1.10.6
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.10.6
Check: installed package size
Result: NOTE installed size is 7.8Mb sub-directories of 1Mb or more: java 7.7Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package BrokenAdaptiveRidge

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: createBarPrior.Rd: fitCyclopsModel createFastBarPrior.Rd: fitCyclopsModel Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package Cyclops

Current CRAN status: NOTE: 7, OK: 6

Version: 3.4.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: createCyclopsData.Rd: Matrix Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 3.4.1
Check: installed package size
Result: NOTE installed size is 28.1Mb sub-directories of 1Mb or more: libs 27.2Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package IterativeHardThresholding

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: createFastIhtPrior.Rd: fitCyclopsModel createIhtPrior.Rd: fitCyclopsModel Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package MultiBD

Current CRAN status: WARN: 1, NOTE: 12

Additional issues

Intel

Version: 0.2.0
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: compiled code
Result: NOTE File ‘MultiBD/libs/MultiBD.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: libs 4.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: --- re-building ‘SIR-MCMC.Rmd’ using rmarkdown --- finished re-building ‘SIR-MCMC.Rmd’ --- re-building ‘SIRtrans.Rnw’ using knitr Error: processing vignette 'SIRtrans.Rnw' failed with diagnostics: Running 'texi2dvi' on 'SIRtrans.tex' failed. LaTeX errors: ! Undefined control sequence. l.132 \hlkwd{library}\hldef {(matrixStats)} ? ! Emergency stop. ! Emergency stop. l.132 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘SIRtrans.Rnw’ SUMMARY: processing the following file failed: ‘SIRtrans.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Package RcppXsimd

Current CRAN status: NOTE: 13

Version: 7.1.6
Check: C++ specification
Result: NOTE Specified C++14: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64