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HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.

Version: 1.2.2
Depends: R (≥ 3.0)
Imports: data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2, readr, readxl, shiny, stringr, tidyr
Suggests: spelling, covr, digest, gridExtra, knitr, pander, renv, rmarkdown, shinycssloaders, shinyhelper, shinyjs, testthat, vdiffr
Published: 2021-08-12
DOI: 10.32614/CRAN.package.HaDeX
Author: Weronika Puchala ORCID iD [cre, aut], Michal Burdukiewicz ORCID iD [aut], Dominik Rafacz ORCID iD [ctb]
Maintainer: Weronika Puchala <puchala.weronika at gmail.com>
License: GPL-3
NeedsCompilation: no
Language: en-US
Materials: README ChangeLog
In views: ChemPhys
CRAN checks: HaDeX results

Documentation:

Reference manual: HaDeX.pdf
Vignettes: HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Data processing
Mass calculation
Data aggregation

Downloads:

Package source: HaDeX_1.2.2.tar.gz
Windows binaries: r-devel: HaDeX_1.2.2.zip, r-release: HaDeX_1.2.2.zip, r-oldrel: HaDeX_1.2.2.zip
macOS binaries: r-release (arm64): HaDeX_1.2.2.tgz, r-oldrel (arm64): HaDeX_1.2.2.tgz, r-release (x86_64): HaDeX_1.2.2.tgz, r-oldrel (x86_64): HaDeX_1.2.2.tgz
Old sources: HaDeX archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=HaDeX to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.