SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS' provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.

Version:	1.0.9
Depends:	R (≥ 3.5.0)
Imports:	dplyr, dynutils (≥ 1.0.3), dynwrap, grDevices, ggplot2 (≥ 2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap, princurve (≥ 2.1.4), purrr, ranger, RANN, RColorBrewer, reshape2, stats, tidyr, TSP
Suggests:	anndata, covr, knitr, reticulate, rmarkdown, Seurat, SingleCellExperiment, testthat (≥ 2.1.0)
Published:	2023-08-07
DOI:	10.32614/CRAN.package.SCORPIUS
Author:	Robrecht Cannoodt [aut, cre] (rcannood), Wouter Saelens [ctb] (zouter)
Maintainer:	Robrecht Cannoodt <rcannood at gmail.com>
BugReports:	https://github.com/rcannood/SCORPIUS/issues
License:	GPL-3
URL:	https://github.com/rcannood/SCORPIUS, http://rcannood.github.io/SCORPIUS/
NeedsCompilation:	no
Citation:	SCORPIUS citation info
Materials:	README NEWS
In views:	Omics
CRAN checks:	SCORPIUS results

Documentation:

Reference manual:	SCORPIUS.pdf
Vignettes:	Running SCORPIUS on a AnnData object Investigating dendritic cell maturation in dendritic cell progenitors Trajectory inference from simulated data Running SCORPIUS on a SingleCellExperiment object

Downloads:

Package source:	SCORPIUS_1.0.9.tar.gz
Windows binaries:	r-devel: SCORPIUS_1.0.9.zip, r-release: SCORPIUS_1.0.9.zip, r-oldrel: SCORPIUS_1.0.9.zip
macOS binaries:	r-release (arm64): SCORPIUS_1.0.9.tgz, r-oldrel (arm64): SCORPIUS_1.0.9.tgz, r-release (x86_64): SCORPIUS_1.0.9.tgz, r-oldrel (x86_64): SCORPIUS_1.0.9.tgz
Old sources:	SCORPIUS archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SCORPIUS to link to this page.