CRAN Package Check Results for Maintainer ‘Bernd Gruber <bernd.gruber at canberra.edu.au>’

Last updated on 2025-03-26 18:53:40 CET.

Package	ERROR	WARN	NOTE	OK
dartR			7	2
dartR.base	1			14
dartR.captive				15
dartR.data			6	9
dartR.popgen			1	14
dartR.spatial		1	3	11
dartRverse				15
PopGenReport		1	3	11

Package dartR

Current CRAN status: NOTE: 7, OK: 2

Additional issues

0len

Version: 2.9.9.5
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘foreach’ All declared Imports should be used. Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2.9.9.5
Check: installed package size
Result: NOTE installed size is 6.4Mb sub-directories of 1Mb or more: R 2.0Mb help 2.6Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.9.9.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘snpStats’ Flavor: r-oldrel-macos-arm64

Version: 2.9.9.5
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘snpStats’ Flavor: r-oldrel-macos-arm64

Package dartR.base

Current CRAN status: ERROR: 1, OK: 14

Version: 1.0.5
Check: package dependencies
Result: ERROR Package required but not available: ‘snpStats’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64

Package dartR.captive

Current CRAN status: OK: 15

Package dartR.data

Current CRAN status: NOTE: 6, OK: 9

Version: 1.0.8
Check: installed package size
Result: NOTE installed size is 5.9Mb sub-directories of 1Mb or more: data 4.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package dartR.popgen

Current CRAN status: NOTE: 1, OK: 14

Version: 1.0.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘snpStats’ Flavor: r-oldrel-macos-arm64

Version: 1.0.0
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘snpStats’ Flavor: r-oldrel-macos-arm64

Package dartR.spatial

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 0.78
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: gl.spatial.autoCorr.Rd: gl.propShared, gl.dist.ind Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.78
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: gl.spatial.autoCorr.Rd:175: missing link ‘gl.propShared’ Rd warning: gl.spatial.autoCorr.Rd:177: missing link ‘gl.dist.ind’ Rd warning: gl.spatial.autoCorr.Rd:178: missing link ‘gl.dist.ind’ Rd warning: gl.spatial.autoCorr.Rd:179: missing link ‘gl.dist.ind’ Rd warning: gl.spatial.autoCorr.Rd:180: missing link ‘gl.dist.ind’ Rd warning: gl.spatial.autoCorr.Rd:185: missing link ‘gl.dist.ind’ Rd warning: gl.spatial.autoCorr.Rd:186: missing link ‘gl.dist.ind’ Rd warning: gl.spatial.autoCorr.Rd:187: missing link ‘gl.dist.ind’ Rd warning: gl.spatial.autoCorr.Rd:188: missing link ‘gl.dist.ind’ Flavor: r-patched-linux-x86_64

Package dartRverse

Current CRAN status: OK: 15

Package PopGenReport

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 3.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: allel.rich.Rd: genind allele.dist.Rd: genind bilby.Rd: genind gd.kosman.Rd: genind gd.smouse.Rd: genind genleastcost.Rd: gdistance, rSPDistance landgenreport.Rd: gdistance, rSPDistance null.all.Rd: genind popgenreport.Rd: genind, import2genind, df2genind, read.fstat, read.structure, read.genetix, read.genepop, Mercator, dismo, knitr, adegenet, pegas, mmod read.genetable.Rd: genind-class, adegenet, import2genind, df2genind, read.fstat, read.structure, read.genetix, read.genepop Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 3.1
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: allel.rich.Rd:10: missing link ‘genind’ Rd warning: allele.dist.Rd:10: missing link ‘genind’ Rd warning: bilby.Rd:14: missing link ‘genind’ Rd warning: gd.kosman.Rd:10: missing link ‘genind’ Rd warning: gd.smouse.Rd:10: missing link ‘genind’ Rd warning: genleastcost.Rd:34: missing link ‘gdistance’ Rd warning: genleastcost.Rd:44: missing link ‘rSPDistance’ Rd warning: landgenreport.Rd:52: missing link ‘gdistance’ Rd warning: landgenreport.Rd:61: missing link ‘rSPDistance’ Rd warning: null.all.Rd:10: missing link ‘genind’ Rd warning: popgenreport.Rd:6: missing link ‘genind’ Rd warning: popgenreport.Rd:167: missing link ‘genind’ Rd warning: popgenreport.Rd:169: missing link ‘import2genind’ Rd warning: popgenreport.Rd:170: missing link ‘df2genind’ Rd warning: popgenreport.Rd:170: missing link ‘read.fstat’ Rd warning: popgenreport.Rd:171: missing link ‘read.structure’ Rd warning: popgenreport.Rd:171: missing link ‘read.genetix’ Rd warning: popgenreport.Rd:172: missing link ‘read.genepop’ Rd warning: popgenreport.Rd:187: missing link ‘Mercator’ Rd warning: popgenreport.Rd:188: missing link ‘dismo’ Rd warning: popgenreport.Rd:43: missing link ‘genind’ Rd warning: popgenreport.Rd:144: missing link ‘knitr’ Rd warning: popgenreport.Rd:230: missing link ‘adegenet’ Rd warning: popgenreport.Rd:230: missing link ‘pegas’ Rd warning: popgenreport.Rd:230: missing link ‘mmod’ Rd warning: read.genetable.Rd:5: missing link ‘genind-class’ Rd warning: read.genetable.Rd:77: missing link ‘adegenet’ Rd warning: read.genetable.Rd:131: missing link ‘import2genind’ Rd warning: read.genetable.Rd:131: missing link ‘df2genind’ Rd warning: read.genetable.Rd:132: missing link ‘read.fstat’ Rd warning: read.genetable.Rd:132: missing link ‘read.structure’ Rd warning: read.genetable.Rd:133: missing link ‘read.genetix’ Rd warning: read.genetable.Rd:133: missing link ‘read.genepop’ Flavor: r-patched-linux-x86_64