CRAN Package Check Results for Maintainer Toby Hocking <toby.hocking at r-project.org>

CRAN Package Check Results for Maintainer ‘Toby Hocking <toby.hocking at r-project.org>’

Last updated on 2025-01-30 16:49:02 CET.

Package	ERROR	NOTE	OK
animint2		2	11
atime			13
aum			13
binsegRcpp			13
directlabels			13
FLOPART			13
inlinedocs			13
LOPART			13
mlr3resampling			13
nc	1		12
neuroblastoma		6	7
PeakError			13
PeakSegDisk			13
PeakSegDP			13
PeakSegJoint			13
PeakSegOptimal			13
penaltyLearning			13
plotHMM			13
WeightedROC		10	3

Package animint2

Current CRAN status: NOTE: 2, OK: 11

Version: 2025.1.21
Check: installed package size
Result: NOTE installed size is 5.1Mb sub-directories of 1Mb or more: data 3.1Mb Flavor: r-release-macos-x86_64

Version: 2024.11.2
Check: installed package size
Result: NOTE installed size is 5.2Mb sub-directories of 1Mb or more: data 3.1Mb Flavor: r-oldrel-macos-x86_64

Package atime

Current CRAN status: OK: 13

Package aum

Current CRAN status: OK: 13

Package FLOPART

Current CRAN status: OK: 13

Package LOPART

Current CRAN status: OK: 13

Package nc

Current CRAN status: ERROR: 1, OK: 12

Version: 2025.1.21
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘v0-overview.Rmd’ using rmarkdown --- finished re-building ‘v0-overview.Rmd’ --- re-building ‘v1-capture-first.Rmd’ using rmarkdown --- finished re-building ‘v1-capture-first.Rmd’ --- re-building ‘v2-capture-all.Rmd’ using rmarkdown --- finished re-building ‘v2-capture-all.Rmd’ --- re-building ‘v3-capture-melt.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-3-1.png 960x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20950 bytes Input file size = 21052 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17438 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17438 Output IDAT size = 17438 bytes (3512 bytes decrease) Output file size = 17516 bytes (3536 bytes = 16.80% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-5-1.png 960x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12577 bytes Input file size = 13444 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11522 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11522 Output IDAT size = 11522 bytes (1055 bytes decrease) Output file size = 11600 bytes (1844 bytes = 13.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18204 bytes Input file size = 18306 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17917 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17003 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17003 Output IDAT size = 17003 bytes (1201 bytes decrease) Output file size = 17081 bytes (1225 bytes = 6.69% decrease) --- finished re-building ‘v3-capture-melt.Rmd’ --- re-building ‘v4-comparisons.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-3-1.png 288x288 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8235 bytes Input file size = 9099 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7819 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7819 Output IDAT size = 7819 bytes (416 bytes decrease) Output file size = 7897 bytes (1202 bytes = 13.21% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8055 bytes Input file size = 8907 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7583 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7583 Output IDAT size = 7583 bytes (472 bytes decrease) Output file size = 7661 bytes (1246 bytes = 13.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-16-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8790 bytes Input file size = 9660 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8271 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8271 Output IDAT size = 8271 bytes (519 bytes decrease) Output file size = 8349 bytes (1311 bytes = 13.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-19-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7166 bytes Input file size = 8021 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6754 Output IDAT size = 6754 bytes (412 bytes decrease) Output file size = 6832 bytes (1189 bytes = 14.82% decrease) Quitting from lines 669-685 [unnamed-chunk-21] (v4-comparisons.Rmd) Error: processing vignette 'v4-comparisons.Rmd' failed with diagnostics: Can't combine `Allele 1` <character> and `Allele 29` <logical>. --- failed re-building ‘v4-comparisons.Rmd’ --- re-building ‘v5-helpers.Rmd’ using rmarkdown --- finished re-building 'v5-helpers.Rmd' --- re-building ‘v6-engines.Rmd’ using rmarkdown --- finished re-building ‘v6-engines.Rmd’ --- re-building ‘v7-capture-glob.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v7-capture-glob_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 13699 bytes Input file size = 14569 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13210 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13210 Output IDAT size = 13210 bytes (489 bytes decrease) Output file size = 13288 bytes (1281 bytes = 8.79% decrease) --- finished re-building ‘v7-capture-glob.Rmd’ SUMMARY: processing the following file failed: ‘v4-comparisons.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package neuroblastoma

Current CRAN status: NOTE: 6, OK: 7

Version: 2023.9.3
Check: installed package size
Result: NOTE installed size is 7.9Mb sub-directories of 1Mb or more: data 7.8Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package PeakError

Current CRAN status: OK: 13

Package PeakSegDisk

Current CRAN status: OK: 13

Package PeakSegDP

Current CRAN status: OK: 13

Package PeakSegJoint

Current CRAN status: OK: 13

Package PeakSegOptimal

Current CRAN status: OK: 13

Package penaltyLearning

Current CRAN status: OK: 13

Package plotHMM

Current CRAN status: OK: 13

Package WeightedROC

Current CRAN status: NOTE: 10, OK: 3

Version: 2020.1.31
Check: Rd files
Result: NOTE checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup? 10 | integer/numeric with values all in {0=negative,1=positive} or | ^ checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup? 11 | {1=negative,2=positive} or {-1=negative,1=positive}.} | ^ checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup? 11 | {1=negative,2=positive} or {-1=negative,1=positive}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.