Last updated on 2024-11-21 19:53:09 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bayesLife | 10 | 3 | |
| bayesMig | 1 | 12 | |
| bayesPop | 3 | 10 | |
| bayesTFR | 4 | 9 | |
| BMA | 13 | ||
| covRobust | 13 | ||
| demogR | 13 | ||
| dma | 10 | 3 | |
| fractaldim | 8 | 5 | |
| mlogitBMA | 13 | ||
| MortCast | 13 | ||
| rlecuyer | 13 | ||
| snowFT | 4 | 9 | |
| vote | 13 | ||
| wpp2008 | 13 | ||
| wpp2010 | 13 | ||
| wpp2012 | 13 | ||
| wpp2015 | 6 | 7 | |
| wpp2017 | 6 | 7 | |
| wpp2019 | 6 | 7 | |
| wppExplorer | 13 |
Current CRAN status: NOTE: 10, OK: 3
Version: 5.2-0
Check: Rd files
Result: NOTE
checkRd: (-1) convert.trajectories.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert.trajectories.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert.trajectories.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert.trajectories.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert.trajectories.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.projection.summary.Rd:34: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.4-6
Check: Rd files
Result: NOTE
checkRd: (-1) plot-traj.Rd:71: Lost braces; missing escapes or markup?
71 | the plots are saved into directory {sim.dir}/predictions/migTrajectories.}
| ^
Flavor: r-release-linux-x86_64
Version: 0.4-6
Check: examples
Result: ERROR
Running examples in ‘bayesMig-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mig.predict
> ### Title: Generate posterior trajectories of net migration rates
> ### Aliases: mig.predict bayesMig.prediction
>
> ### ** Examples
>
> # Toy simulation for US states
> us.mig.file <- file.path(find.package("bayesMig"), "extdata", "USmigrates.txt")
> sim.dir <- tempfile()
> m <- run.mig.mcmc(nr.chains = 2, iter = 30, thin = 1, my.mig.file = us.mig.file,
+ output.dir = sim.dir, present.year = 2017, annual = TRUE)
Starting Bayesian Hierarchical Model Migration.
========================================================
Initialize simulation - 2 chain(s) in total.
Chain nr. 1
************
Starting values:
mu a
-0.1 1.1
Store initial values into mc1
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:30 2024
Iteration: 20 -- Sat Nov 9 20:17:30 2024
Iteration: 30 -- Sat Nov 9 20:17:30 2024
Flushing results into disk.
Chain nr. 2
************
Starting values:
mu a
0.1 5.0
Store initial values into mc2
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:30 2024
Iteration: 20 -- Sat Nov 9 20:17:30 2024
Iteration: 30 -- Sat Nov 9 20:17:31 2024
Flushing results into disk.
Results stored in /home/hornik/tmp/scratch/Rtmp0NrDpk/file3705eb2788689
Simulation successfully finished!!!
>
> # Prediction
> pred <- mig.predict(sim.dir = sim.dir, burnin = 5, end.year = 2050)
Loading chain 1 from disk. (mcmc.list[[ 1 ]]).
Loading chain 2 from disk. (mcmc.list[[ 2 ]]).
Prediction from 2018 until 2050 (i.e. 33 projections)
Storing thinned mcmc:
Storing country-independent parameters ...done.
Storing country-specific parameters ...done.
Migration projection trajectory 1
Migration projection trajectory 2
Migration projection trajectory 3
Migration projection trajectory 4
Migration projection trajectory 5
Migration projection trajectory 6
Migration projection trajectory 7
Migration projection trajectory 8
Migration projection trajectory 9
Migration projection trajectory 10
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Migration projection trajectory 44
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Migration projection trajectory 47
Migration projection trajectory 48
Migration projection trajectory 49
Migration projection trajectory 50
Creating summary files ...
Error in cbind(this.result1, proj.result) :
number of rows of matrices must match (see arg 2)
Calls: mig.predict ... mig.write.projection.summary -> <Anonymous> -> cbind
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.4-6
Check: tests
Result: ERROR
Running ‘run_tests.R’ [4s/4s]
Running ‘test_functions.R’ [0s/0s]
Running the tests in ‘tests/run_tests.R’ failed.
Complete output:
> library(bayesMig)
Loading required package: bayesTFR
> source('test_functions.R')
>
> #options(error=quote(dump.frames("last.dump", TRUE)))
>
> cran <- TRUE
>
> test.run.annual.simulation()
<=== Starting test of running annual migration MCMC for US states ====
Starting Bayesian Hierarchical Model Migration.
========================================================
Initialize simulation - 2 chain(s) in total.
Chain nr. 1
************
Starting values:
mu a
-0.1 1.1
Store initial values into mc1
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:35 2024
Iteration: 20 -- Sat Nov 9 20:17:35 2024
Iteration: 30 -- Sat Nov 9 20:17:35 2024
Flushing results into disk.
Chain nr. 2
************
Starting values:
mu a
0.1 5.0
Store initial values into mc2
Flushing results into disk.
Start sampling - 30 iterations in total.
Iteration: 10 -- Sat Nov 9 20:17:36 2024
Iteration: 20 -- Sat Nov 9 20:17:36 2024
Iteration: 30 -- Sat Nov 9 20:17:36 2024
Flushing results into disk.
Results stored in /home/hornik/tmp/scratch/Rtmp42cNFK/file370d0145706b44
Simulation successfully finished!!!
==== Test of running annual migration MCMC for US states OK.===>
<=== Starting test of running annual projections ====
Loading chain 1 from disk. (mcmc.list[[ 1 ]]).
Loading chain 2 from disk. (mcmc.list[[ 2 ]]).
Prediction from 2018 until 2050 (i.e. 33 projections)
Storing thinned mcmc:
Storing country-independent parameters ...done.
Storing country-specific parameters ...done.
Migration projection trajectory 1
Migration projection trajectory 2
Migration projection trajectory 3
Migration projection trajectory 4
Migration projection trajectory 5
Migration projection trajectory 6
Migration projection trajectory 7
Migration projection trajectory 8
Migration projection trajectory 9
Migration projection trajectory 10
Migration projection trajectory 11
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Migration projection trajectory 28
Migration projection trajectory 29
Migration projection trajectory 30
Migration projection trajectory 31
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Migration projection trajectory 33
Migration projection trajectory 34
Migration projection trajectory 35
Migration projection trajectory 36
Migration projection trajectory 37
Migration projection trajectory 38
Migration projection trajectory 39
Migration projection trajectory 40
Creating summary files ...
Error in cbind(this.result1, proj.result) :
number of rows of matrices must match (see arg 2)
Calls: test.run.annual.simulation ... mig.write.projection.summary -> <Anonymous> -> cbind
Execution halted
Flavor: r-release-linux-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 10.0-1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
age.specific.migration.Rd: wpp2019
pop.aggregate.Rd: bayesLife, bayesTFR
pop.predict.subnat.Rd: bayesTFR, convert.tfr.trajectories
predict.pop.Rd: bayesLife, convert.e0.trajectories, bayesTFR,
convert.tfr.trajectories
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 7.4-4
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
ex-data 4.6Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 1.4-0
Check: Rd files
Result: NOTE
checkRd: (-1) dma.Rd:47: Lost braces; missing escapes or markup?
47 | When y_t is controlled, only y_{t-delay-1} and before
| ^
checkRd: (-1) dma.Rd:64: Lost braces; missing escapes or markup?
64 | estimate of theta_{j-1} for model k at t}
| ^
checkRd: (-1) dma.Rd:66: Lost braces; missing escapes or markup?
66 | variance of theta_{j-1} for model k at t}
| ^
checkRd: (-1) dma.Rd:68: Lost braces; missing escapes or markup?
68 | estimate of theta_{j-1} at t}
| ^
checkRd: (-1) dma.Rd:70: Lost braces; missing escapes or markup?
70 | variance of thetahat_{j-1} at t}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 8, OK: 5
Version: 0.8-5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘RandomFields’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 1.6-1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.0-1
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 1.2-0
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2-0
Check: installed package size
Result: NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
data 6.6Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 2.2-1
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.2-1
Check: installed package size
Result: NOTE
installed size is 12.8Mb
sub-directories of 1Mb or more:
data 12.7Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 1.1-2
Check: installed package size
Result: NOTE
installed size is 11.3Mb
sub-directories of 1Mb or more:
data 11.2Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 1.2-3
Check: installed package size
Result: NOTE
installed size is 11.5Mb
sub-directories of 1Mb or more:
data 11.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 1.1-1
Check: installed package size
Result: NOTE
installed size is 11.4Mb
sub-directories of 1Mb or more:
data 11.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.