CRAN Package Check Results for Maintainer ‘Martin R. Smith <martin.smith at durham.ac.uk>’

Last updated on 2025-04-10 08:59:05 CEST.

Package	NOTE	OK
CongreveLamsdell2016		14
PlotTools		14
Quartet		14
Rogue		14
TBRDist	14
Ternary	6	8
TotalCopheneticIndex		14
TreeDist	7	7
TreeSearch	9	5
TreeTools	4	10

Package CongreveLamsdell2016

Current CRAN status: OK: 14

Package PlotTools

Current CRAN status: OK: 14

Package Quartet

Current CRAN status: OK: 14

Package Rogue

Current CRAN status: OK: 14

Additional issues

rchk

Package TBRDist

Current CRAN status: NOTE: 14

Version: 1.0.2
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: libs 5.1Mb Flavor: r-oldrel-macos-arm64

Package Ternary

Current CRAN status: NOTE: 6, OK: 8

Version: 2.3.3
Check: installed package size
Result: NOTE installed size is 6.9Mb sub-directories of 1Mb or more: doc 5.9Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TotalCopheneticIndex

Current CRAN status: OK: 14

Package TreeDist

Current CRAN status: NOTE: 7, OK: 7

Version: 2.9.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘TreeDistData’ Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.9.2
Check: installed package size
Result: NOTE installed size is 9.0Mb sub-directories of 1Mb or more: doc 4.9Mb libs 3.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TreeSearch

Current CRAN status: NOTE: 9, OK: 5

Version: 1.5.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AdditionTree.Rd: ImposeConstraint AllSPR.Rd: phylo CharacterLength.Rd: phylo ConcordantInformation.Rd: phylo Consistency.Rd: phylo DoubleNNI.Rd: phylo JackLabels.Rd: phylo Jackknife.Rd: phylo MaximizeParsimony.Rd: phylo, ImposeConstraint MorphyTreeLength.Rd: RenumberTips, phylo NNI.Rd: phylo PlotCharacter.Rd: phylo Ratchet.Rd: phylo RearrangeEdges.Rd: phylo SPR.Rd: phylo SiteConcordance.Rd: phylo StopUnlessBifurcating.Rd: phylo SuccessiveApproximations.Rd: phylo TBR.Rd: phylo TBRWarning.Rd: phylo TaxonInfluence.Rd: ClusteringInfoDistance, write.nexus, path_sanitize TreeSearch.Rd: phylo cSPR.Rd: phylo dot-NonDuplicateRoot.Rd: phylo inapplicable.datasets.Rd: read.nexus.data Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.6.0
Check: installed package size
Result: NOTE installed size is 6.2Mb sub-directories of 1Mb or more: datasets 1.6Mb doc 1.3Mb libs 1.6Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.5.1
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: datasets 1.6Mb doc 1.3Mb libs 1.1Mb Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64

Package TreeTools

Current CRAN status: NOTE: 4, OK: 10

Version: 1.13.1
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: R 1.1Mb libs 3.9Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64