CRAN Package Check Results for Maintainer ‘John Muschelli <muschellij2 at gmail.com>’

Last updated on 2024-11-21 19:53:14 CET.

Package WARN NOTE OK
brainR 1 10 2
cforward 3 10
cifti 8 5
diffr 11 2
freesurfer 3 10
fslr 3 10
gcite 11 2
gifti 8 5
glassdoor 11 2
kirby21.base 13
kirby21.fmri 3 10
kirby21.t1 3 10
leanpubr 11 2
matlabr 13
mscstts 3 10
neurobase 3 10
neurohcp 3 10
rscopus 11 2
stapler 11 2
stepcount 13
WhiteStripe 3 10

Package brainR

Current CRAN status: WARN: 1, NOTE: 10, OK: 2

Version: 1.6.0
Check: dependencies in R code
Result: NOTE Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: S3 generic/method consistency
Result: WARN Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: replacement functions
Result: WARN Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified The argument of a replacement function which corresponds to the right hand side must be named ‘value’. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: foreign function calls
Result: NOTE Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: R code for possible problems
Result: NOTE Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: brainR-package.Rd: contour3d, rgl makeScene.Rd: contour3d, nifti-class write4D.Rd: writeOBJ, writeSTL, contour3d write4D.file.Rd: writeOBJ, writeSTL, contour3d writeTrianglesSTL.Rd: writeSTL Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.6.0
Check: for missing documentation entries
Result: WARN Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: for code/documentation mismatches
Result: WARN Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: Rd \usage sections
Result: NOTE Authorization required, but no authorization protocol specified Authorization required, but no authorization protocol specified The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.6.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package cforward

Current CRAN status: NOTE: 3, OK: 10

Version: 0.1.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: cforward.Rd: Surv, concordancefit, coxph estimate_concordance.Rd: Surv, concordancefit, coxph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package cifti

Current CRAN status: NOTE: 8, OK: 5

Version: 0.4.5
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package diffr

Current CRAN status: NOTE: 11, OK: 2

Version: 0.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: diffr.Rd: createWidget Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package freesurfer

Current CRAN status: NOTE: 3, OK: 10

Version: 1.6.10
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: checkmnc-methods.Rd: checkimg fs_cmd.Rd: readnii readmgz.Rd: readnii readmnc.Rd: readnii Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package fslr

Current CRAN status: NOTE: 3, OK: 10

Version: 2.25.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: check_file.Rd: checkimg fast.Rd: readnii flirt.Rd: readnii flirt_apply.Rd: readnii fnirt.Rd: readnii fnirt_with_affine.Rd: readnii fnirt_with_affine_apply.Rd: readnii fsl_anat.Rd: checkimg fsl_applywarp.Rd: readnii fsl_biascorrect.Rd: readnii fsl_cluster.Rd: readnii fsl_deface.Rd: readnii fsl_resample.Rd: readnii fslabs.Rd: readnii fslacos.Rd: readnii fsladd.Rd: readnii fslasin.Rd: readnii fslatan.Rd: readnii fslbet.Rd: readnii fslbin.Rd: readnii fslbinv.Rd: readnii fslchfiletype.Rd: readnii fslcmd.Rd: readnii fslcos.Rd: readnii fslcpgeom.Rd: readnii fsldilate.Rd: readnii fsldiv.Rd: readnii fsledge.Rd: readnii fslepi_reg.Rd: readnii fslerode.Rd: readnii fslexp.Rd: readnii fslfill.Rd: readnii fslfill2.Rd: readnii fslhd.Rd: checkimg fslindex.Rd: readnii fsllog.Rd: readnii fslmask.Rd: readnii fslmaths.Rd: readnii fslmerge.Rd: readnii fslmul.Rd: readnii fslnan.Rd: readnii fslnanm.Rd: readnii fslor.Rd: readnii fslorient.Rd: readnii fslrand.Rd: readnii fslrandn.Rd: readnii fslrange.Rd: checkimg fslrecip.Rd: readnii fslrem.Rd: readnii fslreorient2std.Rd: readnii fslrobustfov.Rd: readnii fslroi.Rd: readnii fslsin.Rd: readnii fslslicetimer.Rd: readnii fslsmooth.Rd: readnii fslsplit.Rd: readnii fslsqr.Rd: readnii fslsqrt.Rd: readnii fslstats.Rd: checkimg fslsub.Rd: readnii fslsub2.Rd: readnii fslswapdim.Rd: readnii fsltan.Rd: readnii fslthresh.Rd: readnii fslval.Rd: checkimg fslview.Rd: checkimg fslvol.Rd: voxdim fslxor.Rd: readnii getForms.Rd: checkimg mcflirt.Rd: readnii melodic.Rd: checkimg mni_img.Rd: nifti readrpi.Rd: readnii susan.Rd: readnii Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package gcite

Current CRAN status: NOTE: 11, OK: 2

Version: 0.10.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: gcite.Rd: GET gcite_author_info.Rd: GET gcite_citation_index.Rd: GET gcite_citation_page.Rd: GET gcite_cite_over_time.Rd: GET gcite_graph.Rd: GET gcite_main_graph.Rd: GET gcite_paper_df.Rd: GET gcite_papers.Rd: GET gcite_user_info.Rd: GET gcite_username.Rd: GET gcite_wordcloud_spec.Rd: wordcloud set_cookies_txt.Rd: set_cookies Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.10.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gifti

Current CRAN status: NOTE: 8, OK: 5

Version: 0.8.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package glassdoor

Current CRAN status: NOTE: 11, OK: 2

Version: 0.8.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: gd_api.Rd: GET Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.8.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package kirby21.base

Current CRAN status: OK: 13

Package kirby21.fmri

Current CRAN status: NOTE: 3, OK: 10

Version: 1.7.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: delete_fmri_data.Rd: delete_kirby21_data download_fmri_data.Rd: download_kirby21_data get_fmri_filenames.Rd: get_image_filenames Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package kirby21.t1

Current CRAN status: NOTE: 3, OK: 10

Version: 1.7.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: delete_t1_data.Rd: delete_kirby21_data download_t1_data.Rd: download_kirby21_data get_t1_filenames.Rd: get_image_filenames Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package leanpubr

Current CRAN status: NOTE: 11, OK: 2

Version: 0.3.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: lp_book_info.Rd: GET lp_coupons.Rd: GET lp_download.Rd: GET lp_get_wrapper.Rd: GET lp_job_status.Rd: GET lp_links.Rd: GET lp_preview.Rd: GET lp_publish.Rd: GET lp_sales.Rd: GET Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.3.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package matlabr

Current CRAN status: OK: 13

Package mscstts

Current CRAN status: NOTE: 3, OK: 10

Version: 0.6.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: ms_list_voices.Rd: GET ms_synthesize.Rd: POST Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package neurobase

Current CRAN status: NOTE: 3, OK: 10

Version: 1.32.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: copyNIfTIHeader.Rd: dropImageDimension, nifti datatype.Rd: convert.datatype, convert.bitpix double_ortho.Rd: orthographic ensure_array.Rd: nifti fast_readnii.Rd: readNifti, drop_img_dim img_list_to_ts.Rd: nifti img_ts_to_df.Rd: nifti img_ts_to_list.Rd: nifti img_ts_to_matrix.Rd: nifti ortho2.Rd: orthographic random_nifti.Rd: nifti readNIfTI2.Rd: readNIfTI, drop_img_dim remake_img.Rd: nifti replace_dropped_dimensions.Rd: nifti rescale_img.Rd: drop_img_dim tempimg.Rd: drop_img_dim writeNIfTI2.Rd: writeNIfTI, drop_img_dim write_nifti.Rd: writeNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package neurohcp

Current CRAN status: NOTE: 3, OK: 10

Version: 0.9.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: bucketlist.Rd: bucket_list_df get_hcp_file.Rd: VERB Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package rscopus

Current CRAN status: NOTE: 11, OK: 2

Version: 0.6.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: author_df.Rd: add_headers, GET author_retrieval.Rd: add_headers, GET author_search.Rd: add_headers, GET author_search_by_affil.Rd: GET elsevier_authenticate.Rd: add_headers, GET generic_elsevier_api.Rd: add_headers, GET get_affiliation_info.Rd: add_headers, GET get_complete_author_info.Rd: add_headers, GET get_links.Rd: GET object_retrieval.Rd: GET, add_headers process_author_name.Rd: add_headers, GET scopus_search.Rd: add_headers, GET Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.6.6
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package stapler

Current CRAN status: NOTE: 11, OK: 2

Version: 0.7.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: staple.Rd: readNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.7.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: staple.Rd: readNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Version: 0.7.1
Flags: --no-vignettes
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package stepcount

Current CRAN status: OK: 13

Package WhiteStripe

Current CRAN status: NOTE: 3, OK: 10

Version: 2.4.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: download_img_data.Rd: img_data smooth_hist.Rd: gam whitestripe_ind_to_mask.Rd: writeNIfTI Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.