CRAN Package Check Results for Maintainer ‘John Muschelli <muschellij2 at gmail.com>’

Last updated on 2024-11-09 01:50:07 CET.

Package ERROR NOTE OK
brainR 11 2
cforward 3 10
cifti 8 5
diffr 11 2
freesurfer 3 10
fslr 3 10
gcite 11 2
gifti 8 5
glassdoor 11 2
kirby21.base 13
kirby21.fmri 3 10
kirby21.t1 3 10
leanpubr 11 2
matlabr 13
mscstts 3 10
neurobase 3 10
neurohcp 3 10
rscopus 11 2
stapler 1 11 1
stepcount 13
WhiteStripe 3 10

Package brainR

Current CRAN status: NOTE: 11, OK: 2

Version: 1.6.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: brainR-package.Rd: contour3d, rgl makeScene.Rd: contour3d, nifti-class write4D.Rd: writeOBJ, writeSTL, contour3d write4D.file.Rd: writeOBJ, writeSTL, contour3d writeTrianglesSTL.Rd: writeSTL Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.6.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package cforward

Current CRAN status: NOTE: 3, OK: 10

Version: 0.1.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: cforward.Rd: Surv, concordancefit, coxph estimate_concordance.Rd: Surv, concordancefit, coxph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package cifti

Current CRAN status: NOTE: 8, OK: 5

Version: 0.4.5
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package diffr

Current CRAN status: NOTE: 11, OK: 2

Version: 0.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: diffr.Rd: createWidget Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package freesurfer

Current CRAN status: NOTE: 3, OK: 10

Version: 1.6.10
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: checkmnc-methods.Rd: checkimg fs_cmd.Rd: readnii readmgz.Rd: readnii readmnc.Rd: readnii Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package fslr

Current CRAN status: NOTE: 3, OK: 10

Version: 2.25.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: check_file.Rd: checkimg fast.Rd: readnii flirt.Rd: readnii flirt_apply.Rd: readnii fnirt.Rd: readnii fnirt_with_affine.Rd: readnii fnirt_with_affine_apply.Rd: readnii fsl_anat.Rd: checkimg fsl_applywarp.Rd: readnii fsl_biascorrect.Rd: readnii fsl_cluster.Rd: readnii fsl_deface.Rd: readnii fsl_resample.Rd: readnii fslabs.Rd: readnii fslacos.Rd: readnii fsladd.Rd: readnii fslasin.Rd: readnii fslatan.Rd: readnii fslbet.Rd: readnii fslbin.Rd: readnii fslbinv.Rd: readnii fslchfiletype.Rd: readnii fslcmd.Rd: readnii fslcos.Rd: readnii fslcpgeom.Rd: readnii fsldilate.Rd: readnii fsldiv.Rd: readnii fsledge.Rd: readnii fslepi_reg.Rd: readnii fslerode.Rd: readnii fslexp.Rd: readnii fslfill.Rd: readnii fslfill2.Rd: readnii fslhd.Rd: checkimg fslindex.Rd: readnii fsllog.Rd: readnii fslmask.Rd: readnii fslmaths.Rd: readnii fslmerge.Rd: readnii fslmul.Rd: readnii fslnan.Rd: readnii fslnanm.Rd: readnii fslor.Rd: readnii fslorient.Rd: readnii fslrand.Rd: readnii fslrandn.Rd: readnii fslrange.Rd: checkimg fslrecip.Rd: readnii fslrem.Rd: readnii fslreorient2std.Rd: readnii fslrobustfov.Rd: readnii fslroi.Rd: readnii fslsin.Rd: readnii fslslicetimer.Rd: readnii fslsmooth.Rd: readnii fslsplit.Rd: readnii fslsqr.Rd: readnii fslsqrt.Rd: readnii fslstats.Rd: checkimg fslsub.Rd: readnii fslsub2.Rd: readnii fslswapdim.Rd: readnii fsltan.Rd: readnii fslthresh.Rd: readnii fslval.Rd: checkimg fslview.Rd: checkimg fslvol.Rd: voxdim fslxor.Rd: readnii getForms.Rd: checkimg mcflirt.Rd: readnii melodic.Rd: checkimg mni_img.Rd: nifti readrpi.Rd: readnii susan.Rd: readnii Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package gcite

Current CRAN status: NOTE: 11, OK: 2

Version: 0.10.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: gcite.Rd: GET gcite_author_info.Rd: GET gcite_citation_index.Rd: GET gcite_citation_page.Rd: GET gcite_cite_over_time.Rd: GET gcite_graph.Rd: GET gcite_main_graph.Rd: GET gcite_paper_df.Rd: GET gcite_papers.Rd: GET gcite_user_info.Rd: GET gcite_username.Rd: GET gcite_wordcloud_spec.Rd: wordcloud set_cookies_txt.Rd: set_cookies Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.10.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gifti

Current CRAN status: NOTE: 8, OK: 5

Version: 0.8.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package glassdoor

Current CRAN status: NOTE: 11, OK: 2

Version: 0.8.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: gd_api.Rd: GET Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.8.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package kirby21.base

Current CRAN status: OK: 13

Package kirby21.fmri

Current CRAN status: NOTE: 3, OK: 10

Version: 1.7.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: delete_fmri_data.Rd: delete_kirby21_data download_fmri_data.Rd: download_kirby21_data get_fmri_filenames.Rd: get_image_filenames Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package kirby21.t1

Current CRAN status: NOTE: 3, OK: 10

Version: 1.7.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: delete_t1_data.Rd: delete_kirby21_data download_t1_data.Rd: download_kirby21_data get_t1_filenames.Rd: get_image_filenames Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package leanpubr

Current CRAN status: NOTE: 11, OK: 2

Version: 0.3.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: lp_book_info.Rd: GET lp_coupons.Rd: GET lp_download.Rd: GET lp_get_wrapper.Rd: GET lp_job_status.Rd: GET lp_links.Rd: GET lp_preview.Rd: GET lp_publish.Rd: GET lp_sales.Rd: GET Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.3.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package matlabr

Current CRAN status: OK: 13

Package mscstts

Current CRAN status: NOTE: 3, OK: 10

Version: 0.6.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: ms_list_voices.Rd: GET ms_synthesize.Rd: POST Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package neurobase

Current CRAN status: NOTE: 3, OK: 10

Version: 1.32.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: copyNIfTIHeader.Rd: dropImageDimension, nifti datatype.Rd: convert.datatype, convert.bitpix double_ortho.Rd: orthographic ensure_array.Rd: nifti fast_readnii.Rd: readNifti, drop_img_dim img_list_to_ts.Rd: nifti img_ts_to_df.Rd: nifti img_ts_to_list.Rd: nifti img_ts_to_matrix.Rd: nifti ortho2.Rd: orthographic random_nifti.Rd: nifti readNIfTI2.Rd: readNIfTI, drop_img_dim remake_img.Rd: nifti replace_dropped_dimensions.Rd: nifti rescale_img.Rd: drop_img_dim tempimg.Rd: drop_img_dim writeNIfTI2.Rd: writeNIfTI, drop_img_dim write_nifti.Rd: writeNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package neurohcp

Current CRAN status: NOTE: 3, OK: 10

Version: 0.9.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: bucketlist.Rd: bucket_list_df get_hcp_file.Rd: VERB Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package rscopus

Current CRAN status: NOTE: 11, OK: 2

Version: 0.6.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: author_df.Rd: add_headers, GET author_retrieval.Rd: add_headers, GET author_search.Rd: add_headers, GET author_search_by_affil.Rd: GET elsevier_authenticate.Rd: add_headers, GET generic_elsevier_api.Rd: add_headers, GET get_affiliation_info.Rd: add_headers, GET get_complete_author_info.Rd: add_headers, GET get_links.Rd: GET object_retrieval.Rd: GET, add_headers process_author_name.Rd: add_headers, GET scopus_search.Rd: add_headers, GET Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.6.6
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package stapler

Current CRAN status: ERROR: 1, NOTE: 11, OK: 1

Version: 0.7.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: staple.Rd: readNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.7.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘staple_example.Rmd’ using rmarkdown Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.7.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: staple.Rd: readNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Version: 0.7.1
Flags: --no-vignettes
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package stepcount

Current CRAN status: OK: 13

Package WhiteStripe

Current CRAN status: NOTE: 3, OK: 10

Version: 2.4.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: download_img_data.Rd: img_data smooth_hist.Rd: gam whitestripe_ind_to_mask.Rd: writeNIfTI Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.