CRAN Package Check Results for Maintainer ‘Robrecht Cannoodt <rcannood at gmail.com>’

Last updated on 2024-12-31 09:49:47 CET.

Package	NOTE	OK
anndata	10	3
babelwhale		13
diffusionMap		13
dyndimred	8	5
dyngen	10	3
dynparam	8	5
dynutils	3	10
dynwrap		13
funkyheatmap	3	10
GillespieSSA		13
GillespieSSA2	4	9
lmds	10	3
princurve		13
qsub		13
SCORPIUS	10	3

Package anndata

Current CRAN status: NOTE: 10, OK: 3

Version: 0.7.5.6
Check: Rd files
Result: NOTE checkRd: (-1) concat.Rd:35: Lost braces; missing escapes or markup? 35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.} | ^ checkRd: (-1) concat.Rd:35: Lost braces 35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.} | ^ checkRd: (-1) concat.Rd:35: Lost braces 35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package babelwhale

Current CRAN status: OK: 13

Package diffusionMap

Current CRAN status: OK: 13

Package dyndimred

Current CRAN status: NOTE: 8, OK: 5

Version: 1.0.4
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘lle’ Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.4
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package dyngen

Current CRAN status: NOTE: 10, OK: 3

Version: 1.0.5
Check: Rd files
Result: NOTE checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup? 57 | By default, sampled from {-1, 1} with probabilities {.25, .75}. | ^ checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup? 57 | By default, sampled from {-1, 1} with probabilities {.25, .75}. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package dynparam

Current CRAN status: NOTE: 8, OK: 5

Version: 1.0.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package dynutils

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.11
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: mapdf.Rd: map Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package dynwrap

Current CRAN status: OK: 13

Package funkyheatmap

Current CRAN status: NOTE: 3, OK: 10

Version: 0.5.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: funky_heatmap.Rd: ggsave Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package GillespieSSA

Current CRAN status: OK: 13

Package GillespieSSA2

Current CRAN status: NOTE: 4, OK: 9

Version: 0.3.0
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 1.7Mb libs 3.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package lmds

Current CRAN status: NOTE: 10, OK: 3

Version: 0.1.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘Matrix’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package princurve

Current CRAN status: OK: 13

Package qsub

Current CRAN status: OK: 13

Package SCORPIUS

Current CRAN status: NOTE: 10, OK: 3

Version: 1.0.9
Check: Rd files
Result: NOTE checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces 19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.} | ^ checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup? 18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.} | ^ checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup? 30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64