CRAN Package Check Results for Maintainer ‘Henrik Bengtsson <henrikb at braju.com>’

Last updated on 2025-03-19 19:52:24 CET.

Package	ERROR	WARN	NOTE	OK
ACNE		1	3	11
aroma.affymetrix		1	10	4
aroma.apd			2	13
aroma.cn			2	13
aroma.core		1	10	4
calmate	1			14
dChipIO				15
doFuture				15
future				15
future.apply				15
future.batchtools		1	3	11
future.callr				15
future.mirai				15
future.tests				15
futureverse				15
globals			4	11
listenv				15
matrixStats				15
parallelly				15
port4me				15
profmem				15
progressr				15
PSCBS		1	3	11
R.cache			12	3
R.devices			1	14
R.filesets				15
R.huge				15
R.matlab			12	3
R.methodsS3				15
R.oo				15
R.rsp				15
R.utils				15
seguid				15
startup				15
TopDom			12	3

Package ACNE

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 0.9.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: doACNE.Rd: AffymetrixCelSet, Verbose Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.9.1
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: doACNE.Rd:29: missing link ‘AffymetrixCelSet’ Rd warning: doACNE.Rd:30: missing link ‘AffymetrixCelSet’ Rd warning: doACNE.Rd:35: missing link ‘Verbose’ Rd warning: doACNE.Rd:36: missing link ‘AffymetrixCelSet’ Flavor: r-patched-linux-x86_64

Package aroma.affymetrix

Current CRAN status: WARN: 1, NOTE: 10, OK: 4

Version: 3.2.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: SmoothMultiarrayModel.Rd: ChromosomalModel, CopyNumberSegmentationModel byPath.AffymetrixFileSet.Rd: GenericDataFile calculateBaseline.ChipEffectSet.Rd: getAverageFile doCRMAv1.Rd: Verbose doCRMAv2.Rd: Verbose doFIRMA.Rd: Verbose doGCRMA.Rd: Verbose doRMA.Rd: Verbose justRMA.Rd: Verbose Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 3.2.2
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: SmoothMultiarrayModel.Rd:43: missing link ‘ChromosomalModel’ Rd warning: SmoothMultiarrayModel.Rd:71: missing link ‘CopyNumberSegmentationModel’ Rd warning: byPath.AffymetrixFileSet.Rd:32: missing link ‘GenericDataFile’ Rd warning: calculateBaseline.ChipEffectSet.Rd:44: missing link ‘getAverageFile’ Rd warning: doCRMAv1.Rd:44: missing link ‘Verbose’ Rd warning: doCRMAv2.Rd:47: missing link ‘Verbose’ Rd warning: doFIRMA.Rd:33: missing link ‘Verbose’ Rd warning: doGCRMA.Rd:44: missing link ‘Verbose’ Rd warning: doRMA.Rd:42: missing link ‘Verbose’ Rd warning: justRMA.Rd:36: missing link ‘Verbose’ Flavor: r-patched-linux-x86_64

Version: 3.2.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'oligo', 'pdInfoBuilder' Flavor: r-release-linux-x86_64

Version: 3.2.2
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘oligo’ Flavor: r-release-linux-x86_64

Version: 3.2.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘AffymetrixDataTestFiles’ Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 3.2.2
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: R 3.0Mb help 1.1Mb testScripts 1.1Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 3.2.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder', 'AffymetrixDataTestFiles' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.2.2
Check: Rd cross-references
Result: NOTE Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package aroma.apd

Current CRAN status: NOTE: 2, OK: 13

Version: 0.7.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘affxparser’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.7.0
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘affxparser’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package aroma.cn

Current CRAN status: NOTE: 2, OK: 13

Version: 1.7.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘GLAD’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package aroma.core

Current CRAN status: WARN: 1, NOTE: 10, OK: 4

Version: 3.3.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: writeDataFrame.AromaUnitSignalBinaryFile.Rd: TabularTextFile writeDataFrame.AromaUnitSignalBinarySet.Rd: TabularTextFileSet writeDataFrame.AromaUnitTabularBinaryFile.Rd: TabularTextFile Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 3.3.1
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: writeDataFrame.AromaUnitSignalBinaryFile.Rd:52: missing link ‘TabularTextFile’ Rd warning: writeDataFrame.AromaUnitSignalBinarySet.Rd:48: missing link ‘TabularTextFileSet’ Rd warning: writeDataFrame.AromaUnitTabularBinaryFile.Rd:52: missing link ‘TabularTextFile’ Flavor: r-patched-linux-x86_64

Version: 3.3.1
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs' Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 3.3.1
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.3.1
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘GLAD’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package calmate

Current CRAN status: ERROR: 1, OK: 14

Version: 0.13.0
Check: package dependencies
Result: ERROR Package required but not available: ‘aroma.core’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64

Package dChipIO

Current CRAN status: OK: 15

Package doFuture

Current CRAN status: OK: 15

Package future

Current CRAN status: OK: 15

Package future.apply

Current CRAN status: OK: 15

Package future.batchtools

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 0.12.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: nbrOfWorkers.batchtools.Rd: plan Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.12.1
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: nbrOfWorkers.batchtools.Rd:12: missing link ‘plan’ Flavor: r-patched-linux-x86_64

Package future.callr

Current CRAN status: OK: 15

Package future.mirai

Current CRAN status: OK: 15

Package future.tests

Current CRAN status: OK: 15

Package futureverse

Current CRAN status: OK: 15

Package globals

Current CRAN status: NOTE: 4, OK: 11

Version: 0.16.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: globalsOf.Rd: codetools Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package listenv

Current CRAN status: OK: 15

Package matrixStats

Current CRAN status: OK: 15

Package parallelly

Current CRAN status: OK: 15

Package port4me

Current CRAN status: OK: 15

Package profmem

Current CRAN status: OK: 15

Package progressr

Current CRAN status: OK: 15

Package PSCBS

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 0.67.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: as.CBS.DNAcopy.Rd: DNAcopy as.DNAcopy.CBS.Rd: DNAcopy Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.67.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: as.CBS.DNAcopy.Rd:26: missing link ‘DNAcopy’ Rd warning: as.CBS.DNAcopy.Rd:40: missing link ‘DNAcopy’ Rd warning: as.DNAcopy.CBS.Rd:31: missing link ‘DNAcopy’ Flavor: r-patched-linux-x86_64

Package R.cache

Current CRAN status: NOTE: 12, OK: 3

Version: 0.16.0
Check: Rd files
Result: NOTE checkRd: (-1) R.cache-package.Rd:28-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) R.cache-package.Rd:31-34: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package R.devices

Current CRAN status: NOTE: 1, OK: 14

Version: 2.17.2
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-release-macos-x86_64

Package R.filesets

Current CRAN status: OK: 15

Package R.huge

Current CRAN status: OK: 15

Package R.matlab

Current CRAN status: NOTE: 12, OK: 3

Version: 3.7.0
Check: Rd files
Result: NOTE checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package R.methodsS3

Current CRAN status: OK: 15

Package R.oo

Current CRAN status: OK: 15

Package R.rsp

Current CRAN status: OK: 15

Package R.utils

Current CRAN status: OK: 15

Package seguid

Current CRAN status: OK: 15

Package startup

Current CRAN status: OK: 15

Package TopDom

Current CRAN status: NOTE: 12, OK: 3

Version: 0.10.1
Check: Rd files
Result: NOTE checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup? 21 | Recommended range is in {5, ..., 20}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64