CRAN Package Check Results for Maintainer ‘Henrik Bengtsson <henrikb at braju.com>’

Last updated on 2025-03-11 14:55:50 CET.

Package	ERROR	NOTE	OK
ACNE		3	12
aroma.affymetrix		9	6
aroma.apd		2	13
aroma.cn		2	13
aroma.core		11	4
calmate	1		14
dChipIO			15
doFuture		3	12
future			15
future.apply			15
future.batchtools		3	12
future.callr			15
future.mirai			15
future.tests			15
futureverse			15
globals		3	12
listenv			15
matrixStats			15
parallelly			15
port4me			15
profmem			15
progressr			15
PSCBS		3	12
R.cache		12	3
R.devices		1	14
R.filesets			15
R.huge			15
R.matlab		12	3
R.methodsS3			15
R.oo			15
R.rsp			15
R.utils			15
seguid			15
startup			15
TopDom		12	3

Package ACNE

Current CRAN status: NOTE: 3, OK: 12

Version: 0.9.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: doACNE.Rd: AffymetrixCelSet, Verbose Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package aroma.affymetrix

Current CRAN status: NOTE: 9, OK: 6

Version: 3.2.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: SmoothMultiarrayModel.Rd: ChromosomalModel, CopyNumberSegmentationModel byPath.AffymetrixFileSet.Rd: GenericDataFile calculateBaseline.ChipEffectSet.Rd: getAverageFile doCRMAv1.Rd: Verbose doCRMAv2.Rd: Verbose doFIRMA.Rd: Verbose doGCRMA.Rd: Verbose doRMA.Rd: Verbose justRMA.Rd: Verbose Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Package unavailable to check Rd xrefs: ‘oligo’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 3.2.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: SmoothMultiarrayModel.Rd: ChromosomalModel, CopyNumberSegmentationModel byPath.AffymetrixFileSet.Rd: GenericDataFile calculateBaseline.ChipEffectSet.Rd: getAverageFile doCRMAv1.Rd: Verbose doCRMAv2.Rd: Verbose doFIRMA.Rd: Verbose doGCRMA.Rd: Verbose doRMA.Rd: Verbose justRMA.Rd: Verbose Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Version: 3.2.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘AffymetrixDataTestFiles’ Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 3.2.2
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: R 3.0Mb help 1.1Mb testScripts 1.1Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 3.2.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder', 'AffymetrixDataTestFiles' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.2.2
Check: Rd cross-references
Result: NOTE Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package aroma.apd

Current CRAN status: NOTE: 2, OK: 13

Version: 0.7.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘affxparser’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.7.0
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘affxparser’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package aroma.cn

Current CRAN status: NOTE: 2, OK: 13

Version: 1.7.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘GLAD’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package aroma.core

Current CRAN status: NOTE: 11, OK: 4

Version: 3.3.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: writeDataFrame.AromaUnitSignalBinaryFile.Rd: TabularTextFile writeDataFrame.AromaUnitSignalBinarySet.Rd: TabularTextFileSet writeDataFrame.AromaUnitTabularBinaryFile.Rd: TabularTextFile Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 3.3.1
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs' Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 3.3.1
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.3.1
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘GLAD’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package calmate

Current CRAN status: ERROR: 1, OK: 14

Version: 0.13.0
Check: package dependencies
Result: ERROR Package required but not available: ‘aroma.core’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64

Package dChipIO

Current CRAN status: OK: 15

Package doFuture

Current CRAN status: NOTE: 3, OK: 12

Version: 1.0.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: doFuture.Rd: foreach, future grapes-dofuture-grapes.Rd: %dopar% Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package future

Current CRAN status: OK: 15

Package future.apply

Current CRAN status: OK: 15

Package future.batchtools

Current CRAN status: NOTE: 3, OK: 12

Version: 0.12.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: nbrOfWorkers.batchtools.Rd: plan Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package future.callr

Current CRAN status: OK: 15

Package future.mirai

Current CRAN status: OK: 15

Package future.tests

Current CRAN status: OK: 15

Package futureverse

Current CRAN status: OK: 15

Package globals

Current CRAN status: NOTE: 3, OK: 12

Version: 0.16.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: globalsOf.Rd: codetools Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package listenv

Current CRAN status: OK: 15

Package matrixStats

Current CRAN status: OK: 15

Package parallelly

Current CRAN status: OK: 15

Package port4me

Current CRAN status: OK: 15

Package profmem

Current CRAN status: OK: 15

Package progressr

Current CRAN status: OK: 15

Package PSCBS

Current CRAN status: NOTE: 3, OK: 12

Version: 0.67.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: as.CBS.DNAcopy.Rd: DNAcopy as.DNAcopy.CBS.Rd: DNAcopy Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package R.cache

Current CRAN status: NOTE: 12, OK: 3

Version: 0.16.0
Check: Rd files
Result: NOTE checkRd: (-1) R.cache-package.Rd:28-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) R.cache-package.Rd:31-34: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package R.devices

Current CRAN status: NOTE: 1, OK: 14

Version: 2.17.2
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-release-macos-x86_64

Package R.filesets

Current CRAN status: OK: 15

Package R.huge

Current CRAN status: OK: 15

Package R.matlab

Current CRAN status: NOTE: 12, OK: 3

Version: 3.7.0
Check: Rd files
Result: NOTE checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package R.methodsS3

Current CRAN status: OK: 15

Package R.oo

Current CRAN status: OK: 15

Package R.rsp

Current CRAN status: OK: 15

Package R.utils

Current CRAN status: OK: 15

Package seguid

Current CRAN status: OK: 15

Package startup

Current CRAN status: OK: 15

Package TopDom

Current CRAN status: NOTE: 12, OK: 3

Version: 0.10.1
Check: Rd files
Result: NOTE checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup? 21 | Recommended range is in {5, ..., 20}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64